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ECOSTRESS nonphotosyntheticvegetation tir axis d3f7b526

ecostress · other

ECOSTRESS nonphotosyntheticvegetation tir axis d3f7b526. v2.0 standardized NIRS package: 1 spectral source(s), 2 declared target(s). Auto-generated from dataset_card.json (verify before publication).

nirv2ecostress
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Private dataset. Full metadata and metrics are shown, but the bytes are not redistributed here — exporting the data requires a Dataverse token. The identity card carries no spectra, only descriptive statistics.
47
samples
1,736
wavelengths
1
sources
2
targets
27
metadata
other
family

Dataset property explorer

Mean profile risk0.61
Highest axisArtefacts locaux · 1.00
Diagnostics8
Sources profiled1
ECOSTRESS nonphotosyntheticvegetation tir axis d3f7b526 property profile0.250.50.751integritynoiseartefactsbaselinePCA outliersreferencerepeatabilitystructureECOSTRESS nonphotosyntheticvegetation tir axis d3f7b526 profileintegrity: 0.00noise: 0.03artefacts: 1.00baseline: 1.00PCA outliers: 0.88reference: 1.00repeatability: 0.00structure: 1.00ECOSTRESS nonph…0 center · 1 outer ring · outward = stronger anomaly / heterogeneity signal

Profile axes

Intégrité0.00
Artefacts locaux1.00
Bruit0.03
Outliers PCA0.88
Distance à la référence1.00
Répétabilité0.00
Baseline / forme1.00
Structure multi-régimes1.00
Diagnostic hypotheses00.250.50.751hypothesis scoreErreur calibration / référenc…Erreur calibration / référence blanche: 0.770.77Splice / raccord détecteursSplice / raccord détecteurs: 0.730.73Fond différentFond différent: 0.720.72Spectre hors domaine valideSpectre hors domaine valide: 0.690.69Différence de sonde / géométr…Différence de sonde / géométrie: 0.620.62Dataset multi-régimesDataset multi-régimes: 0.610.61Signature VERA25-likeSignature VERA25-like: 0.590.59Mélange feuille + fondMélange feuille + fond: 0.550.55
DiagnosticScoreForceSignauxInterprétation probable
Erreur calibration / référence blancheX0.77forteRMS/SAM référence 1.00, artefacts locaux 1.00, Baseline/mean/area 1.00Décalage systématique entre campagnes, instruments ou référence blanche.
Splice / raccord détecteursX0.73forteSpike rate 1.00, RMS/SAM référence 1.00, SNR non dégradé 0.98Rupture aux jonctions de détecteurs, calibration locale ou sonde différente.
Fond différentX0.72moyenneRMS/SAM référence 1.00, Baseline/mean/area 1.00, Mahalanobis / T2 0.88Effet systématique du support, blanc/noir, transflectance ou environnement de mesure.
Spectre hors domaine valideX0.69moyenneRMS/SAM référence 1.00, Structure PCA 1.00, Mahalanobis / T2 0.88Variété, espèce, lot ou condition différente mais physiquement plausible.
Différence de sonde / géométrieX0.62moyenneRMS/SAM référence 1.00, Baseline/mean/area 1.00, Mahalanobis / T2 0.88Modification de l'illumination, collecte, angle ou distance sonde-échantillon.
Dataset multi-régimesX0.61moyenneStructure PCA 1.00, RMS/SAM référence 1.00, Mahalanobis / T2 0.88Mélange de campagnes, opérateurs, lots, setups ou sous-populations spectrales.
Signature VERA25-likeX0.59moyenneSpike rate 1.00, RMS/SAM référence 1.00, Mahalanobis / T2 0.88Combinaison possible changement de sonde + splice, amplifiée par géométrie, fond ou calibration.
Mélange feuille + fondX0.55moyenneRMS/SAM référence 1.00, Baseline/mean/area 1.00, Mahalanobis / T2 0.88Couverture partielle du spot; contribution du fond ou du support.

Spectral sources

nonphotosyntheticvegetation tir

X · other · source instruments vary by sample
nonphotosyntheticvegetation tir spectra020406005101520q05-q95 envelopeq25-q75 envelopemedian spectrummedianq25–q75q05–q95wavelength / none2.501none — median 22.31 (q25–q75 14.7–29.16)2.516none — median 22.61 (q25–q75 14.76–29.24)2.532none — median 23.03 (q25–q75 15.07–29.56)2.547none — median 23.76 (q25–q75 15.53–30.1)2.563none — median 24.67 (q25–q75 16.05–30.73)2.579none — median 25.21 (q25–q75 16.4–31.25)2.595none — median 26.12 (q25–q75 16.54–32.17)2.611none — median 26.19 (q25–q75 16.73–32.1)2.628none — median 26.35 (q25–q75 16.49–32.12)2.644none — median 26 (q25–q75 16.19–31.73)2.662none — median 25.32 (q25–q75 15.48–30.38)2.678none — median 23.56 (q25–q75 14.5–29)2.697none — median 20.8 (q25–q75 12.6–25.81)2.713none — median 16.45 (q25–q75 9.984–20.72)2.732none — median 11.19 (q25–q75 7.574–14.05)2.749none — median 8.478 (q25–q75 5.766–10.81)2.769none — median 6.723 (q25–q75 4.483–8.551)2.786none — median 5.364 (q25–q75 3.673–7.171)2.806none — median 5.036 (q25–q75 3.092–6.028)2.824none — median 4.471 (q25–q75 2.689–5.309)2.844none — median 4.133 (q25–q75 2.436–5.047)2.863none — median 3.808 (q25–q75 2.329–4.944)2.884none — median 3.633 (q25–q75 2.189–4.978)2.903none — median 3.459 (q25–q75 2.094–4.795)2.925none — median 3.498 (q25–q75 2.041–4.792)2.945none — median 3.578 (q25–q75 2.121–4.803)2.967none — median 3.635 (q25–q75 2.204–5.004)2.987none — median 3.615 (q25–q75 2.071–5.068)3.008none — median 3.804 (q25–q75 2.119–4.908)3.031none — median 3.844 (q25–q75 2.356–5.163)3.052none — median 4.454 (q25–q75 2.461–5.684)3.076none — median 4.332 (q25–q75 2.522–5.372)3.098none — median 4.519 (q25–q75 2.587–5.523)3.122none — median 4.843 (q25–q75 3.048–6.036)3.145none — median 4.838 (q25–q75 2.816–6.416)3.17none — median 4.957 (q25–q75 3.067–6.686)3.193none — median 5.136 (q25–q75 3.337–7.019)3.219none — median 5.34 (q25–q75 3.708–7.382)3.243none — median 5.397 (q25–q75 4.076–7.851)3.27none — median 5.685 (q25–q75 4.198–7.811)3.294none — median 6.153 (q25–q75 4.35–7.909)3.322none — median 5.929 (q25–q75 4.336–8.026)3.348none — median 5.73 (q25–q75 4.099–7.804)3.376none — median 4.881 (q25–q75 3.377–6.797)3.403none — median 4.238 (q25–q75 2.844–5.559)3.432none — median 4.921 (q25–q75 3.4–6.513)3.459none — median 4.902 (q25–q75 3.461–6.902)3.49none — median 5.036 (q25–q75 3.77–7.257)3.518none — median 6.026 (q25–q75 4.148–8.109)3.549none — median 6.839 (q25–q75 5.202–9.363)3.579none — median 7.764 (q25–q75 5.556–10.3)3.611none — median 8.243 (q25–q75 5.686–10.68)3.641none — median 8.575 (q25–q75 5.765–10.85)3.675none — median 8.627 (q25–q75 6–11.08)3.707none — median 8.979 (q25–q75 6.214–11.46)3.741none — median 9.305 (q25–q75 6.369–11.8)3.774none — median 9.718 (q25–q75 6.545–12.08)3.807none — median 10.29 (q25–q75 6.778–12.41)3.844none — median 10.66 (q25–q75 6.996–12.83)3.878none — median 11.25 (q25–q75 7.179–13.26)3.917none — median 11.58 (q25–q75 7.27–13.47)3.952none — median 11.85 (q25–q75 7.443–13.84)3.992none — median 12.23 (q25–q75 7.654–14.25)4.029none — median 12.69 (q25–q75 7.959–14.72)4.07none — median 13.35 (q25–q75 8.17–15.41)4.109none — median 13.91 (q25–q75 8.476–16.08)4.152none — median 14.67 (q25–q75 8.873–16.8)4.192none — median 14.98 (q25–q75 9.122–17.45)4.236none — median 15.49 (q25–q75 9.612–18.87)4.278none — median 15.43 (q25–q75 9.539–19.03)4.325none — median 15.95 (q25–q75 9.643–18.75)4.369none — median 15.65 (q25–q75 9.626–18.34)4.417none — median 15.33 (q25–q75 9.679–18.33)4.463none — median 15.14 (q25–q75 9.635–18.25)4.513none — median 15.19 (q25–q75 9.547–18.23)4.561none — median 14.98 (q25–q75 9.403–17.95)4.613none — median 14.59 (q25–q75 9.185–17.36)4.663none — median 14.11 (q25–q75 9.046–17)4.718none — median 14.19 (q25–q75 9.018–16.99)4.77none — median 14.39 (q25–q75 8.999–17.09)4.828none — median 14.31 (q25–q75 8.985–17.05)4.883none — median 14.38 (q25–q75 9.043–16.92)4.943none — median 14.55 (q25–q75 9.077–17.04)5none — median 14.67 (q25–q75 9.219–17.34)5.059none — median 14.75 (q25–q75 9.158–17.52)5.124none — median 14.81 (q25–q75 9.243–17.64)5.185none — median 14.89 (q25–q75 9.268–17.83)5.254none — median 14.78 (q25–q75 9.211–17.57)5.318none — median 14.65 (q25–q75 9.11–17.23)5.39none — median 14.25 (q25–q75 8.852–16.59)5.458none — median 13.45 (q25–q75 7.865–15.67)5.534none — median 10.45 (q25–q75 6.391–13.3)5.606none — median 7.173 (q25–q75 5.021–10.5)5.686none — median 4.771 (q25–q75 3.529–7.585)5.762none — median 4.245 (q25–q75 3.077–5.273)5.846none — median 4.653 (q25–q75 3.076–5.886)5.926none — median 4.731 (q25–q75 3.022–6.489)6.016none — median 4.41 (q25–q75 2.891–6.059)6.101none — median 4.444 (q25–q75 2.864–5.967)6.195none — median 4.6 (q25–q75 3.222–6.454)6.285none — median 4.893 (q25–q75 3.336–6.651)6.386none — median 5.119 (q25–q75 3.639–7.096)6.482none — median 4.986 (q25–q75 3.608–7.041)6.589none — median 4.728 (q25–q75 3.585–6.688)6.691none — median 4.948 (q25–q75 3.577–6.668)6.805none — median 4.212 (q25–q75 2.796–5.286)6.914none — median 4.143 (q25–q75 2.615–5.264)7.036none — median 4.098 (q25–q75 2.482–5.197)7.152none — median 4.021 (q25–q75 2.6–5.234)7.283none — median 3.526 (q25–q75 2.375–5.05)7.408none — median 3.683 (q25–q75 2.512–5.121)7.548none — median 3.533 (q25–q75 2.437–5.02)7.682none — median 3.657 (q25–q75 2.352–5.002)7.821none — median 3.59 (q25–q75 2.276–4.831)7.978none — median 3.428 (q25–q75 2.299–4.835)8.128none — median 3.622 (q25–q75 2.273–4.912)8.297none — median 3.642 (q25–q75 2.23–4.793)8.459none — median 3.527 (q25–q75 2.159–4.686)8.642none — median 3.157 (q25–q75 2.444–4.942)8.819none — median 3.121 (q25–q75 2.308–4.794)9.018none — median 3.172 (q25–q75 2.459–4.76)9.21none — median 3.315 (q25–q75 2.39–4.873)9.428none — median 4.105 (q25–q75 2.855–5.473)9.638none — median 4.245 (q25–q75 2.964–5.641)9.877none — median 4.707 (q25–q75 3.104–6.201)10.108none — median 5.015 (q25–q75 3.345–6.671)10.371none — median 5.401 (q25–q75 3.645–7.655)10.626none — median 6.006 (q25–q75 4.029–8.31)10.917none — median 5.863 (q25–q75 3.826–7.894)11.2none — median 5.545 (q25–q75 3.541–7.378)11.523none — median 5.76 (q25–q75 3.617–7.787)11.839none — median 5.509 (q25–q75 3.373–7.731)12.201none — median 5 (q25–q75 2.943–7.263)12.555none — median 4.62 (q25–q75 2.777–6.695)12.964none — median 4.547 (q25–q75 2.82–6.43)13.364none — median 4.293 (q25–q75 2.817–6.216)13.828none — median 3.84 (q25–q75 2.424–5.617)14.285none — median 3.606 (q25–q75 2.444–5.445)14.815none — median 3.852 (q25–q75 2.61–5.487)15.341none — median 4.075 (q25–q75 2.658–5.46)

Sampling

Wavelengths1,736
Axis range2.501–15.34 none
Mean spacing0.0074 none
Gridirregular
Observations47

Signal & quality

Value range-1.36 – 60.5
Mean range3.8 – 25.6
Mean level9.363
Area85.44
PTP21.79
Noise RMS0.031474
SNR3e+02
SNR dB5e+01 dB
Dynamic range21.8
Smoothness0.2092
Saturated0.0%
X-outliers15

Integrity & artefacts

NaN ratio0.00%
Inf count0
Zero ratio0.00%
Spike count1,066
Spike rate1.31%
Jump count435
Jump rate0.53%
Clip fraction0.00%

Shape & reference

Baseline slope-10.881
Curvature RMS0.1529
D1 RMS0.11474
RMS to mean3.7824
RMS p958.9041
SAM to mean0.12462
SAM p950.29801
Affine offset p955.299
Affine gain p95 Δ0.92161
Affine residual p951.5932
Xcorr lag p950

Outliers & repeatability

PCA Q p95/median3.5
Hotelling T2 p95/median7
Mahalanobis H p95/median2.6
Repeat groups0

Dimensionality (PCA)

Effective rank1.5
PCs → 95% var2
PCs → 99% var4
Top-10 cum. var99.9%
Computed metric scores 29worst 1.00
FamilleMétrique calculéeValeurScoreNiveauInterprétation datasetCauses typiquesCalcul / scoring
Intégrité des donnéesNaN ratiointegrity.nan_ratio0%0.00faibleSpectre completErreur acquisition/exportcount(isnan(X)) / X.sizealert = min(1, nan_ratio / 0.05)
Intégrité des donnéesInf countintegrity.inf_count00.00faibleNormalCalculs invalidescount(isinf(X))alert = min(1, inf_count / 1)
Intégrité des donnéesZero ratiointegrity.zero_ratio0%0.00faibleNormalExport, saturationcount(X == 0) / count(finite X)alert = min(1, zero_ratio / 0.05)
Amplitude globaleMean reflectanceamplitude.mean_reflectance9.36321.00fortValeur atypique: Trop clair / fond visible ou Trop sombreFond, géométriemean(X finite)alert reuses baseline/shape drift because absolute reflectance ranges are technology-dependent
Amplitude globaleArea under curveamplitude.area_under_curve85.4441.00fortValeur atypique: Différence d'éclairement ou NormalDistance sondetrapezoid(mean_spectrum, spectral_axis)alert reuses baseline/shape drift because area scale depends on axis and units
Amplitude globalePeak-to-peak (PTP)amplitude.peak_to_peak21.7930.00faibleVariabilité forteSaturationmax(mean_spectrum) - min(mean_spectrum)alert increases when dynamic range is abnormally flat
Amplitude globaleVarianceamplitude.variance66.9440.00faibleNormal ou hétérogèneMauvais contactvar(X finite)alert increases when variance/dynamic range is abnormally flat
BruitNoise RMSnoise.noise_rms0.0314740.03faibleStableLampe, détecteurmedian MAD(second derivative) * 1.4826 / sqrt(6)alert = noise_rms / signal_scale, saturated at 5%
BruitSNRnoise.snr297.490.00faibleBon signalAcquisitionmean(abs(X)) / noise_rmsalert decreases with SNR dB; >=40 dB is treated as low alert
BruitBandwise SNRnoise.bandwise_snr_min28.8760.17faibleZone fiableDétecteurmin(abs(mean_spectrum) / local second-derivative noise)alert decreases with worst-band SNR dB; >=35 dB is treated as low alert
Artefacts locauxSpike countartefacts.spike_count1,0661.00fortArtefactsCosmic rays, splicecount robust outliers in second derivativealert follows spike_rate, saturated at 1%
Artefacts locauxSpike rateartefacts.spike_rate1.31%1.00fortSpectre suspectInterpolationspike_count / (n_samples * (n_features - 2))alert = min(1, spike_rate / 0.01)
Artefacts locauxJump countartefacts.jump_count4350.53moyenRaccord détecteurSplicecount robust outliers in first derivativealert follows jump_rate, saturated at 1%
Artefacts locauxJump rateartefacts.jump_rate0.533%0.53moyenProblème spectralCalibrationjump_count / (n_samples * (n_features - 1))alert = min(1, jump_rate / 0.01)
Artefacts locauxClip fractionartefacts.clip_fraction0.00245%0.00faibleNormalDétecteur saturéfraction of finite cells equal to repeated min/max extremaalert = min(1, clip_fraction / 0.01)
Forme spectraleBaseline slopeshape.baseline_slope-10.8811.00fortDériveÉclairementlinear slope of mean_spectrum over normalized axisalert = abs(slope / signal_scale), saturated at 0.5
Forme spectraleCurvature RMSshape.curvature_rms0.15290.70moyenForme inhabituelleFond, splicemedian RMS(second derivative per spectrum)alert = curvature_rms / signal_scale, saturated at 1%
Forme spectraleD1 RMSshape.d1_rms0.114740.11faiblePlatBiologie ou artefactmedian RMS(first derivative per spectrum)alert = d1_rms / signal_scale, saturated at 5%
Outliers multivariésPCA Q (SPE)outliers.pca_q_ratio3.47580.43moyenSpectre atypiqueArtefact, mélangep95(Q/SPE residual) / median(Q/SPE residual)alert = min(1, pca_q_ratio / 8)
Outliers multivariésHotelling T²outliers.hotelling_t2_ratio7.0390.88fortExtrême mais cohérentVariabilité naturellep95(Hotelling T2) / median(Hotelling T2)alert = min(1, hotelling_t2_ratio / 8)
Outliers multivariésMahalanobis Houtliers.mahalanobis_h_ratio2.64110.66moyenOutlier globalDomaine différentp95(sqrt(T2)) / median(sqrt(T2))alert = min(1, mahalanobis_h_ratio / 4)
Comparaison à référenceRMS to mean spectrumreference.rms_to_mean_spectrum_p958.90411.00fortSpectre différentDomain shiftp95 RMS distance to dataset mean spectrumalert = RMS_p95 / signal_scale, saturated at 25%
Comparaison à référenceSpectral Angle Mapper (SAM)reference.sam_to_mean_spectrum_p950.298010.85fortForme différenteFond, géométriep95 spectral angle to dataset mean spectrumalert = min(1, SAM_p95 / 0.35 rad)
RépétabilitéRMS intra-IDrepeatability.rms_intra_id0.00faibleStablePositionnementmedian RMS distance to repeated-sample centroidalert = RMS_intra_ID / signal_scale, saturated at 10%
RépétabilitéSAM intra-IDrepeatability.sam_intra_id0.00faibleStableAcquisitionmedian SAM to repeated-sample centroidalert = min(1, SAM_intra_ID / 0.15 rad)
RépétabilitéCV intra-IDrepeatability.cv_intra_id0.00faibleStableOpérateurmedian within-ID band CValert = min(1, CV_intra_ID / 0.25)
Structure du datasetPCA score densitystructure.pca_score_density0.0183191.00fortSous-populationsLots différents1 / median kNN distance in PCA score spacealert follows density_cv/profile structure complexity, not raw density alone
Structure du datasetLocal Outlier Factor (LOF)structure.local_outlier_factor_p954.25941.00fortSpectre isoléCas raresp95 approximate LOF from PCA-score kNN distancesalert = min(1, max(0, LOF_p95 - 1) / 2)
Structure du datasetIsolation Forest scorestructure.isolation_forest_score_p950.627721.00fortSpectre atypiqueDiverses causesp95 IsolationForest anomaly score on PCA scoresalert follows structure complexity; raw score is implementation-dependent
X PCA score plot-1,000-5000500-1000100200300PC1 -125.2 · PC2 -92.15PC1 -46.55 · PC2 -11.44PC1 27.58 · PC2 -84.48PC1 -146.5 · PC2 -71.01PC1 -845.4 · PC2 118.6PC1 -623.5 · PC2 17.53PC1 -137.8 · PC2 1.017PC1 -0.972 · PC2 -66.7PC1 161.8 · PC2 -33.66PC1 100.6 · PC2 -56.41PC1 127.8 · PC2 -38.49PC1 -71.72 · PC2 -23.21PC1 -156.1 · PC2 18.44PC1 -88.82 · PC2 -20.51PC1 -72.97 · PC2 -6.164PC1 -41.62 · PC2 27.13PC1 -32.34 · PC2 -51.17PC1 68.03 · PC2 -39.22PC1 178.8 · PC2 56.19PC1 88.05 · PC2 -9.494PC1 171 · PC2 -42.94PC1 93.61 · PC2 -40.6PC1 -90.79 · PC2 23.45PC1 -166.5 · PC2 -21.44PC1 305.5 · PC2 36.07PC1 292.8 · PC2 28.99PC1 -200.5 · PC2 0.8222PC1 -391.5 · PC2 -48.92PC1 -27.49 · PC2 -31.26PC1 -9.716 · PC2 -59.63PC1 18.48 · PC2 -27.21PC1 -72.26 · PC2 -83.51PC1 -86.59 · PC2 -45.85PC1 -139.3 · PC2 -38.33PC1 -97.41 · PC2 -45.73PC1 83.91 · PC2 120.5PC1 146.7 · PC2 61.12PC1 -80.3 · PC2 224.3PC1 193.5 · PC2 59.22PC1 199.8 · PC2 58.55PC1 217.3 · PC2 14.66PC1 276.2 · PC2 -0.3889PC1 267.8 · PC2 -6.762PC1 152.9 · PC2 73.06PC1 63.09 · PC2 142.3PC1 246.1 · PC2 4.007PC1 270.7 · PC2 10.73PC1 (90.2%)PC2 (7.3%)47 scores
PCA explained variance0%25%50%75%100%PC1: 90.2% (cumulative 90.2%)1PC2: 7.3% (cumulative 97.5%)2PC3: 1.0% (cumulative 98.5%)3PC4: 0.7% (cumulative 99.2%)4PC5: 0.2% (cumulative 99.4%)5PC6: 0.2% (cumulative 99.6%)6PC7: 0.2% (cumulative 99.7%)7PC8: 0.1% (cumulative 99.8%)8PC9: 0.1% (cumulative 99.8%)9PC10: 0.0% (cumulative 99.9%)10cumulative explained variancePC variancecumulativeprincipal component · cumulative (dashed)

Metric interpretation reference

Metric catalog 29
FamilleMétriqueCe qu’elle détecteForte valeur =Faible valeur =Causes typiquesCalcul / score
Intégrité des donnéesNaN ratioDonnées manquantesSpectre corrompuSpectre completErreur acquisition/exportcount(isnan(X)) / X.sizealert = min(1, nan_ratio / 0.05)
Intégrité des donnéesInf countValeurs infiniesCorruptionNormalCalculs invalidescount(isinf(X))alert = min(1, inf_count / 1)
Intégrité des donnéesZero ratioColonnes ou cellules nullesSpectre tronquéNormalExport, saturationcount(X == 0) / count(finite X)alert = min(1, zero_ratio / 0.05)
Amplitude globaleMean reflectanceNiveau moyenTrop clair / fond visibleTrop sombreFond, géométriemean(X finite)alert reuses baseline/shape drift because absolute reflectance ranges are technology-dependent
Amplitude globaleArea under curveIntensité globaleDifférence d'éclairementNormalDistance sondetrapezoid(mean_spectrum, spectral_axis)alert reuses baseline/shape drift because area scale depends on axis and units
Amplitude globalePeak-to-peak (PTP)DynamiqueVariabilité forteSpectre platSaturationmax(mean_spectrum) - min(mean_spectrum)alert increases when dynamic range is abnormally flat
Amplitude globaleVarianceVariabilité spectraleNormal ou hétérogèneSpectre platMauvais contactvar(X finite)alert increases when variance/dynamic range is abnormally flat
BruitNoise RMSBruit haute fréquenceBruitéStableLampe, détecteurmedian MAD(second derivative) * 1.4826 / sqrt(6)alert = noise_rms / signal_scale, saturated at 5%
BruitSNRQualité signalBon signalMauvais signalAcquisitionmean(abs(X)) / noise_rmsalert decreases with SNR dB; >=40 dB is treated as low alert
BruitBandwise SNRBruit localiséZone fiableZone problématiqueDétecteurmin(abs(mean_spectrum) / local second-derivative noise)alert decreases with worst-band SNR dB; >=35 dB is treated as low alert
Artefacts locauxSpike countPics étroitsArtefactsSpectre propreCosmic rays, splicecount robust outliers in second derivativealert follows spike_rate, saturated at 1%
Artefacts locauxSpike rateDensité de picsSpectre suspectNormalInterpolationspike_count / (n_samples * (n_features - 2))alert = min(1, spike_rate / 0.01)
Artefacts locauxJump countDiscontinuitésRaccord détecteurContinuSplicecount robust outliers in first derivativealert follows jump_rate, saturated at 1%
Artefacts locauxJump rateFréquence de sautsProblème spectralNormalCalibrationjump_count / (n_samples * (n_features - 1))alert = min(1, jump_rate / 0.01)
Artefacts locauxClip fractionSaturationClippingNormalDétecteur saturéfraction of finite cells equal to repeated min/max extremaalert = min(1, clip_fraction / 0.01)
Forme spectraleBaseline slopePente globaleDériveStableÉclairementlinear slope of mean_spectrum over normalized axisalert = abs(slope / signal_scale), saturated at 0.5
Forme spectraleCurvature RMSCourbureForme inhabituelleLisseFond, splicemedian RMS(second derivative per spectrum)alert = curvature_rms / signal_scale, saturated at 1%
Forme spectraleD1 RMSVariabilité localeSpectre structuréPlatBiologie ou artefactmedian RMS(first derivative per spectrum)alert = d1_rms / signal_scale, saturated at 5%
Outliers multivariésPCA Q (SPE)Non expliqué par PCASpectre atypiqueConformeArtefact, mélangep95(Q/SPE residual) / median(Q/SPE residual)alert = min(1, pca_q_ratio / 8)
Outliers multivariésHotelling T²Extrême dans PCAExtrême mais cohérentCentralVariabilité naturellep95(Hotelling T2) / median(Hotelling T2)alert = min(1, hotelling_t2_ratio / 8)
Outliers multivariésMahalanobis HDistance au nuageOutlier globalPopulation normaleDomaine différentp95(sqrt(T2)) / median(sqrt(T2))alert = min(1, mahalanobis_h_ratio / 4)
Comparaison à référenceRMS to mean spectrumDistance moyenneSpectre différentTypiqueDomain shiftp95 RMS distance to dataset mean spectrumalert = RMS_p95 / signal_scale, saturated at 25%
Comparaison à référenceSpectral Angle Mapper (SAM)Différence de formeForme différenteSimilaireFond, géométriep95 spectral angle to dataset mean spectrumalert = min(1, SAM_p95 / 0.35 rad)
RépétabilitéRMS intra-IDReproductibilitéMauvaise répétabilitéStablePositionnementmedian RMS distance to repeated-sample centroidalert = RMS_intra_ID / signal_scale, saturated at 10%
RépétabilitéSAM intra-IDVariation de formeInstableStableAcquisitionmedian SAM to repeated-sample centroidalert = min(1, SAM_intra_ID / 0.15 rad)
RépétabilitéCV intra-IDVariabilité interneMauvais contrôleStableOpérateurmedian within-ID band CValert = min(1, CV_intra_ID / 0.25)
Structure du datasetPCA score densityClustersSous-populationsHomogèneLots différents1 / median kNN distance in PCA score spacealert follows density_cv/profile structure complexity, not raw density alone
Structure du datasetLocal Outlier Factor (LOF)Anomalie localeSpectre isoléPopulation normaleCas raresp95 approximate LOF from PCA-score kNN distancesalert = min(1, max(0, LOF_p95 - 1) / 2)
Structure du datasetIsolation Forest scoreAnomalie globaleSpectre atypiqueNormalDiverses causesp95 IsolationForest anomaly score on PCA scoresalert follows structure complexity; raw score is implementation-dependent
Technology-specific extensions
TechnologieAdaptations / métriquesAnomalies cibléesCommentaire pratique
UV-Vis 300-1000 nmBaseline, pente globale, dérive aux bords 300-350 et 900-1000; métriques par zonesLumière parasite, mauvais blanc, saturation, faible signal aux extrémitésLes bords sont souvent instables; calculer aussi des scores edge/middle.
UV-Vis 300-1000 nmSaturation / clipping proche absorbance max ou réflectance maxSignal écrêtéTrès important si absorption forte.
UV-Vis 300-1000 nmRed-edge, position de maximum, ratios de bandes si végétalDécalage biologique ou artefact optiqueAide à distinguer changement réel et problème d'acquisition.
UV-Vis 300-1000 nmSmoothness / roughness indexBruit haute fréquenceSouvent plus informatif que le SNR seul.
MIR / ATR-FTIRATR contact quality index: intensité globale, aire totale, profondeur des bandes clésMauvais contact cristal-échantillonCrucial: beaucoup d'anomalies viennent du contact ATR.
MIR / ATR-FTIRCO2 / H2O atmospheric bandsMauvaise correction atmosphériquePics parasites fréquents.
MIR / ATR-FTIRBaseline curvature / rubber-band residualDiffusion, contact, dérive baselineTrès utile avant PCA.
MIR / ATR-FTIRPeak position shiftMauvais alignement spectral / calibrationImportant en FTIR car de petits shifts comptent.
MIR / ATR-FTIRBand area ratios sur bandes connuesSpectre chimiquement incohérentÀ adapter par matrice: polysaccharides, protéines, lipides, etc.
HS-MSTotal Ion Current (TIC), Base Peak Intensity (BPI)Injection faible, ionisation instableÉquivalent MS du niveau global spectral.
HS-MSNombre de pics détectésSpectre pauvre ou trop bruitéTrop peu = mauvais signal; trop = bruit/contamination.
HS-MSMass accuracy / m/z driftProblème calibration masseFondamental en HRMS.
HS-MSRetention time drift si LC/GC-MSDérive chromatographiqueÀ suivre sur standards/QC pools.
HS-MSBlank contamination scoreContaminants / carry-overComparer échantillons vs blancs.
HS-MSInternal standard CVVariabilité instrumentaleTrès robuste si standards disponibles.
HS-MSMissingness par featureInstabilité de détectionCrucial pour filtrer les variables.
Avec répétitionsRMS intra-échantillonRépétabilité globaleApplicable à toutes les technologies.
Avec répétitionsSAM / corrélation intra-échantillonRépétabilité de formeTrès utile pour spectres.
Avec répétitionsCV intra-échantillon par bande / featureRépétabilité localeDétecte les zones instables.
Avec répétitionsICC ou variance componentsPart variance échantillon vs techniqueTrès utile si plusieurs répétitions par sample.
Avec répétitionsDistance au centroïde intra-IDRépétition aberrantePermet de flagger la mauvaise répétition plutôt que le sample entier.
Bug-hunting / supervised audits
Famille de bug potentielMéthodes à ajouterCe que ça détecteÉtat dans l’explorateur
Shift spectral globalCorrélation spectre moyen inter-dataset, DTW, cross-correlation, comparaison positions de picsDécalage en longueur d'onde, mauvais alignement, interpolation différentePartiellement calculé: cross-correlation lag et dispersion des positions de pics vs spectre moyen.
Baseline / offset / gainRégression chaque spectre vs spectre moyen: x = a + b ref + residual; suivi de a, b, RMS résiduelOffset additif, effet multiplicatif, dérive de baselineCalculé dans reference.affine_*.
Mélange de lignes / mauvais appariement X-M-YVérification index, hash des lignes, duplication ID, distance spectrale intra-ID, labels incohérentsLignes mélangées, metadata mal alignées, Y attribué au mauvais spectrePartiellement couvert par répétabilité intra-ID; checks index/hash à ajouter au pipeline canonical.
Fuite d'information / répétitions mal splitéesGroupKFold par sample_id vs StratifiedKFold random; audit des partitions par sample_idPerformance artificiellement bonne due aux répétitionsNécessite splits et benchmark modèle; non calculé par la carte descriptive.
Label bugsÉchantillons proches en X mais Y différents, confident learning, erreurs systématiques FP/FNY inversés, erreurs de saisie, classes ambiguësNécessite Y et/ou modèle; recommandé pour l'explorateur supervisé.
Sous-domaines cachésPCA/UMAP/t-SNE + clustering non supervisé + association avec dataset/Y/date/operatorLots, campagnes, sondes, backgrounds non renseignésPartiellement calculé par structure PCA/LOF; UMAP/t-SNE hors carte statique.
Artefacts localisés inconnusCarte wavelength x dataset: différence moyenne, différence variance, KS par longueur d'ondeRégions spectrales anormales non anticipéesÀ calculer au niveau banque quand plusieurs datasets partagent un axe spectral.
Ruptures instrumentalesDiscontinuités dans dérivées, changepoint detectionSplice, raccord détecteur, saut local non prévuCalculé par jump/spike rates; changepoint plus avancé à ajouter.
Mélange / contamination spectraleNMF / unmixing / reconstruction par convex hullComposante externe: fond, plastique, solNon calculé automatiquement; nécessite hypothèses de composants ou grande bibliothèque.
Features instables mais prédictivesImportance modèle vs instabilité QC par variableModèle qui apprend un artefact plutôt qu'un signal biologiqueNécessite modèle supervisé; recommandé pour rapports de benchmark.

Variables

Targets 2

material_name

target · categorical
material_name classesPinus coulteri barkPinus coulteri bark: 33Quercus sp. litterQuercus sp. litter: 33Abies concolor dry needlesAbies concolor dry needles: 33Pinus coulteri dry needlesPinus coulteri dry needles: 33Pinus lambertiana dry needlesPinus lambertiana dry needles: 33Pinus ponderosa dry needlesPinus ponderosa dry needles: 33Abies concolor barkAbies concolor bark: 22Acer rubrumAcer rubrum: 22Betula papyriferaBetula papyrifera: 22Calocedrus decurrens barkCalocedrus decurrens bark: 22+10 more+10 more: 1919
n / missing47 / 0
Classes22
Balance (entropy)0.99
Imbalance ratio3
Top classPinus coulteri bark (3)

class_label

target · categorical
class_label classesbarkbark: 1818needlesneedles: 1212leavesleaves: 1111branchesbranches: 66
n / missing47 / 0
Classes4
Balance (entropy)0.95
Imbalance ratio3
Top classbark (18)

Metadata 6

ecostress_resource_id

metadata · categorical
n / missing47 / 0
Classes47
Balance (entropy)1
Imbalance ratio1
Top classnonphotosyntheticvegetation.bark.abies.concolor.tir.vh311.ucsb.nicolet.spectrum (1)

location

metadata · categorical
location classes37.04403333, -119.30225, WGS8437.04403333, -119.30225, WGS84: 1919USA, Massachusetts, Harvard F…USA, Massachusetts, Harvard Forest: 101034.413836, -119.880173, WGS8434.413836, -119.880173, WGS84: 8834.51457, -119.79877, WGS8434.51457, -119.79877, WGS84: 6634.4925, -119.7904, WGS8434.4925, -119.7904, WGS84: 44
n / missing47 / 0
Classes5
Balance (entropy)0.91
Imbalance ratio5
Top class37.04403333, -119.30225, WGS84 (19)

date

metadata · categorical
date classes5/10/20145/10/2014: 19193/18/20153/18/2015: 18187/8/20137/8/2013: 1010
n / missing47 / 0
Classes3
Balance (entropy)0.97
Imbalance ratio2
Top class5/10/2014 (19)

species

metadata · categorical
species classesbarkbark: 1818needlesneedles: 1212leavesleaves: 1111branchesbranches: 66
n / missing47 / 0
Classes4
Balance (entropy)0.95
Imbalance ratio3
Top classbark (18)

sample_description

metadata · categorical
sample_description classesSamples were collected as par…Samples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD.: 2525Sample is bark with lichen an…Sample is bark with lichen and moss. Samples were collected as part of NSF Macrosystem Biology proposal titled: Collaborative Research: Thermal controls on ecosystem metabolism and function: scaling from leaves to canopies to regions. Samples were collected and overnighted to JPL facilities for processing. The same leaves were processed in the Nicolet and then measured using the ASD.: 88Samples were collected as par…Samples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD. Sample was taken from an alive plant.: 33Samples were collected as par…Samples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD. Samples were alive, but dying and were yellow.: 22Samples were collected as par…Samples were collected as part of NSF Macrosystem Biology proposal titled: Collaborative Research: Thermal controls on ecosystem metabolism and function: scaling from leaves to canopies to regions. Samples were collected and overnighted to JPL facilities for processing. The same leaves were processed in the Nicolet and then measured using the ASD.: 22Samples were collected as par…Samples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD. Samples were previous year's litter, mostly decomposed grasses.: 22Samples were collected as par…Samples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD. Samples were taken from dead trees.: 22Samples were collected as par…Samples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD. Sample was from recently dead plant.: 11Samples were collected as par…Samples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD. Samples were current year's litter, grasses.: 11Samples were collected as par…Samples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD. Samples were current year's litter composed of grasses.: 11
n / missing47 / 0
Classes10
Balance (entropy)0.69
Imbalance ratio25
Top classSamples were collected as part of the HyspIRI Airborne Campaign proposal titled: HyspIRI discrimination of plant species and functional types along a strong environmental temperature gradient. The same materials were processed in the Nicolet and then measured using the ASD. (25)

notes

metadata · categorical
n / missing47 / 37
Classes10
Balance (entropy)1
Imbalance ratio1
Top classnonphotosyntheticvegetation.bark.acer.rubrum.tir.acru-1-81.ucsb.nicolet.ancillary.txt (1)
Constant metadata 14
  • categorynonphotosyntheticvegetation
  • material_typenon photosynthetic vegetation
  • instrumentucsb.nicolet
  • acquisition_modeHemispherical reflectance
  • signal_typeReflectance (percentage)
  • axis_unitWavelength (micrometers)
  • axis_min2.501
  • axis_max15.34
  • n_points_original1,736
  • publication_doi10.1016/j.rse.2019.05.015
  • citationMeerdink et al. 2019, Baldridge et al. 2009
  • licenseCopyright California Institute of Technology / JPL, all rights reserved
  • rights_statusmanual_review_needed
  • usage_scopeprivate_use_only

7 variable(s) omitted (no recorded values).

Alignment

Alignment levelobservation
Sample id availableyes
Samples47
Observations (total)47
Reps per samplemin 1 · mean 1 · max 1

Provenance & citation

ContributorECOSTRESS Spectral Library
Origin · url [open]https://speclib.jpl.nasa.gov/download
Origin · url [open]https://speclib.jpl.nasa.gov/
Origin · script [manual]source_to_standard.py — standardization script (maintainer-only)
Publication10.1016/j.rse.2019.05.015 — The ECOSTRESS spectral library version 1.0
Publication10.1016/j.rse.2008.11.007 — The ASTER Spectral Library Version 2.0

Governance & integrity

Tierprivate
LicenseLicenseRef-not-cleared
Permitted useResearch and benchmarking; private use only.
Access policyManual download / private-use-only per source.
RedistributionOfficial ECOSTRESS page requests citation and states copyright/all rights reserved; converted matrices are private/internal until redistribution rights are clarified.
Content version1.0.0
Schema / protocol2.0
Content hash30ad7a7d15cd37ad…
Processing hash5cb01e707afe8774…
Metadata hashd2e4f93a6f47003e…

Load this dataset

# pip install nirs4all-datasets
from nirs4all_datasets import get

# private dataset — export requires a Dataverse token
ds = get("ecostress_nonphotosyntheticvegetation_tir_1736points_47rows", token="…")
X, y = ds.x(), ds.y()
print(X.shape, y.shape)

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