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ROD Raman native-axis 2478-point mineral subset f5432ef0

rod · Raman

ROD Raman native-axis 2478-point mineral subset f5432ef0. v2.0 standardized NIRS package: 1 spectral source(s), 4 declared target(s). Auto-generated from dataset_card.json (verify before publication).

nirv2rod
11
samples
2,478
wavelengths
1
sources
4
targets
21
metadata
Raman
family

Dataset property explorer

Mean profile risk0.58
Highest axisArtefacts locaux · 1.00
Diagnostics8
Sources profiled1
ROD Raman native-axis 2478-point mineral subset f5432ef0 property profile0.250.50.751integritynoiseartefactsbaselinePCA outliersreferencerepeatabilitystructureROD Raman native-axis 2478-point mineral subset f5432ef0 profileintegrity: 0.04noise: 0.00artefacts: 1.00baseline: 0.63PCA outliers: 1.00reference: 1.00repeatability: 0.00structure: 1.00ROD Raman nativ…0 center · 1 outer ring · outward = stronger anomaly / heterogeneity signal

Profile axes

Intégrité0.04
Artefacts locaux1.00
Bruit0.00
Outliers PCA1.00
Distance à la référence1.00
Répétabilité0.00
Baseline / forme0.63
Structure multi-régimes1.00
Diagnostic hypotheses00.250.50.751hypothesis scoreSplice / raccord détecteursSplice / raccord détecteurs: 0.900.90Signature VERA25-likeSignature VERA25-like: 0.750.75Spectre hors domaine valideSpectre hors domaine valide: 0.740.74Erreur interpolation / réécha…Erreur interpolation / rééchantillonnage: 0.720.72Erreur calibration / référenc…Erreur calibration / référence blanche: 0.720.72Dataset multi-régimesDataset multi-régimes: 0.690.69Fond différentFond différent: 0.680.68Différence de sonde / géométr…Différence de sonde / géométrie: 0.640.64
DiagnosticScoreForceSignauxInterprétation probable
Splice / raccord détecteursX0.90forteSpike rate 1.00, Jump rate 1.00, RMS/SAM référence 1.00Rupture aux jonctions de détecteurs, calibration locale ou sonde différente.
Signature VERA25-likeX0.75forteMahalanobis / T2 1.00, Spike rate 1.00, Jump rate 1.00Combinaison possible changement de sonde + splice, amplifiée par géométrie, fond ou calibration.
Spectre hors domaine valideX0.74forteMahalanobis / T2 1.00, RMS/SAM référence 1.00, Structure PCA 1.00Variété, espèce, lot ou condition différente mais physiquement plausible.
Erreur interpolation / rééchantillonnageX0.72forteSpike rate 1.00, Jump rate 1.00, SNR normal/élevé 1.00Artefacts numériques ou traitement spectral incorrect.
Erreur calibration / référence blancheX0.72forteMahalanobis / T2 1.00, RMS/SAM référence 1.00, artefacts locaux 1.00Décalage systématique entre campagnes, instruments ou référence blanche.
Dataset multi-régimesX0.69moyenneStructure PCA 1.00, RMS/SAM référence 1.00, Mahalanobis / T2 1.00Mélange de campagnes, opérateurs, lots, setups ou sous-populations spectrales.
Fond différentX0.68moyenneMahalanobis / T2 1.00, RMS/SAM référence 1.00, PCA Q 0.81Effet systématique du support, blanc/noir, transflectance ou environnement de mesure.
Différence de sonde / géométrieX0.64moyenneMahalanobis / T2 1.00, RMS/SAM référence 1.00, PCA Q 0.81Modification de l'illumination, collecte, angle ou distance sonde-échantillon.

Spectral sources

ROD native Raman axis group

X · Raman · ROD source metadata, not consistently specified
ROD native Raman axis group spectra050,000100,000150,000200,00005001,0001,500q05-q95 envelopeq25-q75 envelopemedian spectrummedianq25–q75q05–q95wavelength / cm-191.533cm-1 — median 0 (q25–q75 0–0)100.21cm-1 — median 12.61 (q25–q75 7.279–27.12)108.89cm-1 — median 10.42 (q25–q75 4.421–98.5)117.09cm-1 — median 25.47 (q25–q75 2.095–112.8)125.76cm-1 — median 37.69 (q25–q75 16.03–113.6)134.44cm-1 — median 21.95 (q25–q75 14.76–83.03)143.12cm-1 — median 8.706 (q25–q75 4.955–24.35)151.8cm-1 — median 11.14 (q25–q75 5.075–43.57)160.48cm-1 — median 37.11 (q25–q75 23.67–94.54)168.67cm-1 — median 89.92 (q25–q75 19.86–224.3)177.35cm-1 — median 88.57 (q25–q75 8.9–395)186.03cm-1 — median 32.13 (q25–q75 18.01–256.3)194.71cm-1 — median 39.47 (q25–q75 19.45–190)203.38cm-1 — median 41.5 (q25–q75 25.6–95.85)211.58cm-1 — median 51.95 (q25–q75 43.6–66.83)220.26cm-1 — median 44.47 (q25–q75 18.71–87.84)228.94cm-1 — median 52.03 (q25–q75 16.58–82.47)237.61cm-1 — median 64.78 (q25–q75 23.02–77.72)246.29cm-1 — median 26.39 (q25–q75 17.88–72.1)254.97cm-1 — median 38.56 (q25–q75 14.02–60.92)263.17cm-1 — median 12.38 (q25–q75 3.991–43.85)271.84cm-1 — median 8.118 (q25–q75 2.988–23.8)280.52cm-1 — median 6.695 (q25–q75 2.162–32.72)289.2cm-1 — median 7.523 (q25–q75 2.477–33.07)297.88cm-1 — median 11.9 (q25–q75 1.47–101.1)306.56cm-1 — median 35.36 (q25–q75 17.94–162)314.75cm-1 — median 48.09 (q25–q75 17.33–186.6)323.43cm-1 — median 77.69 (q25–q75 15.62–264.7)332.11cm-1 — median 69.39 (q25–q75 15.95–183.4)340.79cm-1 — median 60.81 (q25–q75 14.36–305.6)349.47cm-1 — median 25.92 (q25–q75 12.59–291.2)357.66cm-1 — median 40.25 (q25–q75 5.605–167.1)366.34cm-1 — median 32.41 (q25–q75 4.251–110)375.02cm-1 — median 20.95 (q25–q75 4.911–71.45)383.7cm-1 — median 18.74 (q25–q75 9.878–58.65)392.37cm-1 — median 14.41 (q25–q75 4.03–44.75)401.05cm-1 — median 9.846 (q25–q75 3.729–27.5)409.25cm-1 — median 8.42 (q25–q75 2.801–26.67)417.93cm-1 — median 13.55 (q25–q75 6.106–32.92)426.6cm-1 — median 8.651 (q25–q75 5.572–36.81)435.28cm-1 — median 10.88 (q25–q75 3.503–46.58)443.96cm-1 — median 14.11 (q25–q75 2.82–37.44)452.16cm-1 — median 22.53 (q25–q75 5.131–59.49)460.83cm-1 — median 5.866 (q25–q75 3.819–47.48)469.51cm-1 — median 10.08 (q25–q75 6.622–69.76)478.19cm-1 — median 26.8 (q25–q75 5.573–55.64)486.87cm-1 — median 28.89 (q25–q75 11.02–73.97)495.55cm-1 — median 47 (q25–q75 18.34–108.4)503.74cm-1 — median 61.14 (q25–q75 10.83–129.3)512.42cm-1 — median 9.188 (q25–q75 6.863–71.24)521.1cm-1 — median 8.332 (q25–q75 3.581–28.29)529.78cm-1 — median 9.91 (q25–q75 2.754–35.86)538.46cm-1 — median 12.38 (q25–q75 7.911–36.98)546.65cm-1 — median 13.74 (q25–q75 3.445–50.4)555.33cm-1 — median 25.14 (q25–q75 7.376–76.4)564.01cm-1 — median 15.36 (q25–q75 4.251–48.52)572.69cm-1 — median 7.401 (q25–q75 3.796–58.3)581.36cm-1 — median 6.216 (q25–q75 4.792–15.4)590.04cm-1 — median 3.61 (q25–q75 1.394–8.784)598.24cm-1 — median 4.184 (q25–q75 0.7252–6.339)606.92cm-1 — median 5.956 (q25–q75 3.519–17.52)615.59cm-1 — median 6.576 (q25–q75 2.258–41.65)624.27cm-1 — median 8.633 (q25–q75 3.268–59.96)632.95cm-1 — median 26.36 (q25–q75 2.237–57.7)641.15cm-1 — median 8.35 (q25–q75 3.996–49.01)649.82cm-1 — median 9.271 (q25–q75 1.871–54.48)658.5cm-1 — median 4.039 (q25–q75 1.705–38.39)667.18cm-1 — median 7.228 (q25–q75 4.864–18.03)675.86cm-1 — median 4.72 (q25–q75 1.043–10.31)684.54cm-1 — median 10.25 (q25–q75 1.956–16.32)692.73cm-1 — median 9.724 (q25–q75 2.989–26.6)701.41cm-1 — median 11.52 (q25–q75 3.959–52.76)710.09cm-1 — median 12.88 (q25–q75 4.89–49.51)718.77cm-1 — median 11.01 (q25–q75 3.16–37.31)727.45cm-1 — median 8.039 (q25–q75 2.59–63.78)736.12cm-1 — median 6.739 (q25–q75 3.89–51.15)744.32cm-1 — median 14.75 (q25–q75 2.765–98.69)753cm-1 — median 20.44 (q25–q75 2.5–89.98)761.68cm-1 — median 11.02 (q25–q75 3.298–81.36)770.35cm-1 — median 5.775 (q25–q75 1.879–178.5)779.03cm-1 — median 3.401 (q25–q75 2.686–437.9)787.23cm-1 — median 15.97 (q25–q75 1.521–697.8)795.91cm-1 — median 54.79 (q25–q75 3.793–452.6)804.58cm-1 — median 162.3 (q25–q75 4.668–218.8)813.26cm-1 — median 73.72 (q25–q75 7.991–337.3)821.94cm-1 — median 66.4 (q25–q75 8.692–352.5)830.62cm-1 — median 25.36 (q25–q75 3.848–272.4)838.81cm-1 — median 10.19 (q25–q75 2.422–238.6)847.49cm-1 — median 10.28 (q25–q75 5.451–295.2)856.17cm-1 — median 20.74 (q25–q75 3.807–163.7)864.85cm-1 — median 6.541 (q25–q75 3.515–93.36)873.53cm-1 — median 15.79 (q25–q75 10.36–98.44)881.72cm-1 — median 29.62 (q25–q75 16.77–94.1)890.4cm-1 — median 23.43 (q25–q75 16.29–69.35)899.08cm-1 — median 25.56 (q25–q75 5.176–36.24)907.76cm-1 — median 9.491 (q25–q75 1.853–25.83)916.43cm-1 — median 7.232 (q25–q75 2.179–24.65)925.11cm-1 — median 17.25 (q25–q75 4.773–46.72)933.31cm-1 — median 12.8 (q25–q75 4.453–22.14)941.99cm-1 — median 6.101 (q25–q75 2.627–18.26)950.67cm-1 — median 8.115 (q25–q75 4.025–10.81)959.34cm-1 — median 10.94 (q25–q75 5.009–15.09)968.02cm-1 — median 6.337 (q25–q75 3.052–40.22)976.22cm-1 — median 4.811 (q25–q75 2.119–18.84)984.9cm-1 — median 3.852 (q25–q75 1.196–21.09)993.57cm-1 — median 3.708 (q25–q75 1.152–15.66)1002.3cm-1 — median 4.379 (q25–q75 1.518–13.44)1010.9cm-1 — median 3.417 (q25–q75 2.188–9.313)1019.6cm-1 — median 4.731 (q25–q75 2.755–9.306)1027.8cm-1 — median 4.538 (q25–q75 1.694–10.59)1036.5cm-1 — median 2.074 (q25–q75 1.342–10.82)1045.2cm-1 — median 2.258 (q25–q75 1.484–11)1053.8cm-1 — median 2.066 (q25–q75 0.8038–10.42)1062.5cm-1 — median 2.143 (q25–q75 0.6817–6.571)1070.7cm-1 — median 3.087 (q25–q75 2.246–6.543)1079.4cm-1 — median 4.702 (q25–q75 2.383–7.783)1088.1cm-1 — median 5.88 (q25–q75 1.667–11.13)1096.7cm-1 — median 2.962 (q25–q75 1.57–21.61)1105.4cm-1 — median 3.658 (q25–q75 1.298–7.473)1114.1cm-1 — median 3.391 (q25–q75 1.069–6.476)1122.3cm-1 — median 2.15 (q25–q75 0.806–3.767)1131cm-1 — median 1.018 (q25–q75 0.4663–2.828)1139.7cm-1 — median 1.019 (q25–q75 0.5742–3.385)1148.3cm-1 — median 1.753 (q25–q75 1.027–3.247)1157cm-1 — median 2.326 (q25–q75 1.951–3.377)1165.7cm-1 — median 2.828 (q25–q75 2.015–3.244)1173.9cm-1 — median 2.825 (q25–q75 2.501–4.575)1182.6cm-1 — median 2.425 (q25–q75 2.227–3.986)1191.2cm-1 — median 1.68 (q25–q75 1.023–6.23)1199.9cm-1 — median 1.464 (q25–q75 0.7116–6.144)1208.6cm-1 — median 0.9207 (q25–q75 0.5997–3.222)1216.8cm-1 — median 1.384 (q25–q75 0.9622–4.392)1225.5cm-1 — median 1.829 (q25–q75 1.477–3.19)1234.2cm-1 — median 0.633 (q25–q75 0.1013–1.27)1242.8cm-1 — median 0.4926 (q25–q75 0.2868–1.934)1251.5cm-1 — median 1.883 (q25–q75 1.282–2.489)1260.2cm-1 — median 1.214 (q25–q75 1.057–4.832)1268.4cm-1 — median 1.019 (q25–q75 0.6351–2.651)1277.1cm-1 — median 1.574 (q25–q75 0.6294–1.737)1285.7cm-1 — median 0 (q25–q75 0–0)

Sampling

Wavelengths2,478
Axis range91.53–1286 cm-1
Mean spacing0.482 cm-1
Griduniform
Observations11

Signal & quality

Value range-0.692 – 3.48e+05
Mean range0 – 3.16e+04
Mean level1266
Area1.512e+06
PTP3.161e+04
Noise RMS0.22747
SNR5.6e+03
SNR dB7e+01 dB
Dynamic range3.16e+04
Smoothness33.13
Saturated0.0%
X-outliers3

Integrity & artefacts

NaN ratio0.00%
Inf count0
Zero ratio0.08%
Spike count329
Spike rate1.21%
Jump count1,904
Jump rate6.99%
Clip fraction0.01%

Shape & reference

Baseline slope-4060.1
Curvature RMS1.04
D1 RMS4.2227
RMS to mean3853.9
RMS p9521163
SAM to mean1.4545
SAM p951.5042
Affine offset p95318.94
Affine gain p95 Δ5.5026
Affine residual p95421.13
Xcorr lag p9550

Outliers & repeatability

PCA Q p95/median6.5
Hotelling T2 p95/median50
Mahalanobis H p95/median5.5
Repeat groups0

Dimensionality (PCA)

Effective rank1
PCs → 95% var1
PCs → 99% var1
Top-10 cum. var100.0%
Computed metric scores 29worst 1.00
FamilleMétrique calculéeValeurScoreNiveauInterprétation datasetCauses typiquesCalcul / scoring
Intégrité des donnéesNaN ratiointegrity.nan_ratio0%0.00faibleSpectre completErreur acquisition/exportcount(isnan(X)) / X.sizealert = min(1, nan_ratio / 0.05)
Intégrité des donnéesInf countintegrity.inf_count00.00faibleNormalCalculs invalidescount(isinf(X))alert = min(1, inf_count / 1)
Intégrité des donnéesZero ratiointegrity.zero_ratio0.0807%0.02faibleNormalExport, saturationcount(X == 0) / count(finite X)alert = min(1, zero_ratio / 0.05)
Amplitude globaleMean reflectanceamplitude.mean_reflectance12660.63moyenValeur atypique: Trop clair / fond visible ou Trop sombreFond, géométriemean(X finite)alert reuses baseline/shape drift because absolute reflectance ranges are technology-dependent
Amplitude globaleArea under curveamplitude.area_under_curve1.5125e+060.63moyenValeur atypique: Différence d'éclairement ou NormalDistance sondetrapezoid(mean_spectrum, spectral_axis)alert reuses baseline/shape drift because area scale depends on axis and units
Amplitude globalePeak-to-peak (PTP)amplitude.peak_to_peak316110.00faibleVariabilité forteSaturationmax(mean_spectrum) - min(mean_spectrum)alert increases when dynamic range is abnormally flat
Amplitude globaleVarianceamplitude.variance1.6132e+080.00faibleNormal ou hétérogèneMauvais contactvar(X finite)alert increases when variance/dynamic range is abnormally flat
BruitNoise RMSnoise.noise_rms0.227470.00faibleStableLampe, détecteurmedian MAD(second derivative) * 1.4826 / sqrt(6)alert = noise_rms / signal_scale, saturated at 5%
BruitSNRnoise.snr5565.70.00faibleBon signalAcquisitionmean(abs(X)) / noise_rmsalert decreases with SNR dB; >=40 dB is treated as low alert
BruitBandwise SNRnoise.bandwise_snr_min1.45460.91fortZone problématiqueDétecteurmin(abs(mean_spectrum) / local second-derivative noise)alert decreases with worst-band SNR dB; >=35 dB is treated as low alert
Artefacts locauxSpike countartefacts.spike_count3291.00fortArtefactsCosmic rays, splicecount robust outliers in second derivativealert follows spike_rate, saturated at 1%
Artefacts locauxSpike rateartefacts.spike_rate1.21%1.00fortSpectre suspectInterpolationspike_count / (n_samples * (n_features - 2))alert = min(1, spike_rate / 0.01)
Artefacts locauxJump countartefacts.jump_count1,9041.00fortRaccord détecteurSplicecount robust outliers in first derivativealert follows jump_rate, saturated at 1%
Artefacts locauxJump rateartefacts.jump_rate6.99%1.00fortProblème spectralCalibrationjump_count / (n_samples * (n_features - 1))alert = min(1, jump_rate / 0.01)
Artefacts locauxClip fractionartefacts.clip_fraction0.00734%0.01faibleNormalDétecteur saturéfraction of finite cells equal to repeated min/max extremaalert = min(1, clip_fraction / 0.01)
Forme spectraleBaseline slopeshape.baseline_slope-4060.10.26faibleStableÉclairementlinear slope of mean_spectrum over normalized axisalert = abs(slope / signal_scale), saturated at 0.5
Forme spectraleCurvature RMSshape.curvature_rms1.040.00faibleLisseFond, splicemedian RMS(second derivative per spectrum)alert = curvature_rms / signal_scale, saturated at 1%
Forme spectraleD1 RMSshape.d1_rms4.22270.00faiblePlatBiologie ou artefactmedian RMS(first derivative per spectrum)alert = d1_rms / signal_scale, saturated at 5%
Outliers multivariésPCA Q (SPE)outliers.pca_q_ratio6.47060.81fortSpectre atypiqueArtefact, mélangep95(Q/SPE residual) / median(Q/SPE residual)alert = min(1, pca_q_ratio / 8)
Outliers multivariésHotelling T²outliers.hotelling_t2_ratio50.3451.00fortExtrême mais cohérentVariabilité naturellep95(Hotelling T2) / median(Hotelling T2)alert = min(1, hotelling_t2_ratio / 8)
Outliers multivariésMahalanobis Houtliers.mahalanobis_h_ratio5.49271.00fortOutlier globalDomaine différentp95(sqrt(T2)) / median(sqrt(T2))alert = min(1, mahalanobis_h_ratio / 4)
Comparaison à référenceRMS to mean spectrumreference.rms_to_mean_spectrum_p95211631.00fortSpectre différentDomain shiftp95 RMS distance to dataset mean spectrumalert = RMS_p95 / signal_scale, saturated at 25%
Comparaison à référenceSpectral Angle Mapper (SAM)reference.sam_to_mean_spectrum_p951.50421.00fortForme différenteFond, géométriep95 spectral angle to dataset mean spectrumalert = min(1, SAM_p95 / 0.35 rad)
RépétabilitéRMS intra-IDrepeatability.rms_intra_id—0.00faibleStablePositionnementmedian RMS distance to repeated-sample centroidalert = RMS_intra_ID / signal_scale, saturated at 10%
RépétabilitéSAM intra-IDrepeatability.sam_intra_id—0.00faibleStableAcquisitionmedian SAM to repeated-sample centroidalert = min(1, SAM_intra_ID / 0.15 rad)
RépétabilitéCV intra-IDrepeatability.cv_intra_id—0.00faibleStableOpérateurmedian within-ID band CValert = min(1, CV_intra_ID / 0.25)
Structure du datasetPCA score densitystructure.pca_score_density0.00405861.00fortSous-populationsLots différents1 / median kNN distance in PCA score spacealert follows density_cv/profile structure complexity, not raw density alone
Structure du datasetLocal Outlier Factor (LOF)structure.local_outlier_factor_p954279.31.00fortSpectre isoléCas raresp95 approximate LOF from PCA-score kNN distancesalert = min(1, max(0, LOF_p95 - 1) / 2)
Structure du datasetIsolation Forest scorestructure.isolation_forest_score_p950.755971.00fortSpectre atypiqueDiverses causesp95 IsolationForest anomaly score on PCA scoresalert follows structure complexity; raw score is implementation-dependent
X PCA score plot-1,000,00001,000,0002,000,000-15,000-10,000-5,00005,00010,000PC1 -1.917e+05 · PC2 -157.6PC1 -1.919e+05 · PC2 285.2PC1 -1.918e+05 · PC2 743.9PC1 -1.918e+05 · PC2 -1136PC1 -1.92e+05 · PC2 -463.1PC1 -1.892e+05 · PC2 -1.083e+04PC1 -1.919e+05 · PC2 214.6PC1 -1.915e+05 · PC2 -1445PC1 -1.915e+05 · PC2 6947PC1 -1.916e+05 · PC2 5829PC1 1.915e+06 · PC2 11.53PC1 (100.0%)PC2 (0.0%)11 scores
PCA explained variance0%25%50%75%100%PC1: 100.0% (cumulative 100.0%)1PC2: 0.0% (cumulative 100.0%)2PC3: 0.0% (cumulative 100.0%)3PC4: 0.0% (cumulative 100.0%)4PC5: 0.0% (cumulative 100.0%)5PC6: 0.0% (cumulative 100.0%)6PC7: 0.0% (cumulative 100.0%)7PC8: 0.0% (cumulative 100.0%)8PC9: 0.0% (cumulative 100.0%)9PC10: 0.0% (cumulative 100.0%)10cumulative explained variancePC variancecumulativeprincipal component · cumulative (dashed)

Metric interpretation reference

Metric catalog 29
FamilleMétriqueCe qu’elle détecteForte valeur =Faible valeur =Causes typiquesCalcul / score
Intégrité des donnéesNaN ratioDonnées manquantesSpectre corrompuSpectre completErreur acquisition/exportcount(isnan(X)) / X.sizealert = min(1, nan_ratio / 0.05)
Intégrité des donnéesInf countValeurs infiniesCorruptionNormalCalculs invalidescount(isinf(X))alert = min(1, inf_count / 1)
Intégrité des donnéesZero ratioColonnes ou cellules nullesSpectre tronquéNormalExport, saturationcount(X == 0) / count(finite X)alert = min(1, zero_ratio / 0.05)
Amplitude globaleMean reflectanceNiveau moyenTrop clair / fond visibleTrop sombreFond, géométriemean(X finite)alert reuses baseline/shape drift because absolute reflectance ranges are technology-dependent
Amplitude globaleArea under curveIntensité globaleDifférence d'éclairementNormalDistance sondetrapezoid(mean_spectrum, spectral_axis)alert reuses baseline/shape drift because area scale depends on axis and units
Amplitude globalePeak-to-peak (PTP)DynamiqueVariabilité forteSpectre platSaturationmax(mean_spectrum) - min(mean_spectrum)alert increases when dynamic range is abnormally flat
Amplitude globaleVarianceVariabilité spectraleNormal ou hétérogèneSpectre platMauvais contactvar(X finite)alert increases when variance/dynamic range is abnormally flat
BruitNoise RMSBruit haute fréquenceBruitéStableLampe, détecteurmedian MAD(second derivative) * 1.4826 / sqrt(6)alert = noise_rms / signal_scale, saturated at 5%
BruitSNRQualité signalBon signalMauvais signalAcquisitionmean(abs(X)) / noise_rmsalert decreases with SNR dB; >=40 dB is treated as low alert
BruitBandwise SNRBruit localiséZone fiableZone problématiqueDétecteurmin(abs(mean_spectrum) / local second-derivative noise)alert decreases with worst-band SNR dB; >=35 dB is treated as low alert
Artefacts locauxSpike countPics étroitsArtefactsSpectre propreCosmic rays, splicecount robust outliers in second derivativealert follows spike_rate, saturated at 1%
Artefacts locauxSpike rateDensité de picsSpectre suspectNormalInterpolationspike_count / (n_samples * (n_features - 2))alert = min(1, spike_rate / 0.01)
Artefacts locauxJump countDiscontinuitésRaccord détecteurContinuSplicecount robust outliers in first derivativealert follows jump_rate, saturated at 1%
Artefacts locauxJump rateFréquence de sautsProblème spectralNormalCalibrationjump_count / (n_samples * (n_features - 1))alert = min(1, jump_rate / 0.01)
Artefacts locauxClip fractionSaturationClippingNormalDétecteur saturéfraction of finite cells equal to repeated min/max extremaalert = min(1, clip_fraction / 0.01)
Forme spectraleBaseline slopePente globaleDériveStableÉclairementlinear slope of mean_spectrum over normalized axisalert = abs(slope / signal_scale), saturated at 0.5
Forme spectraleCurvature RMSCourbureForme inhabituelleLisseFond, splicemedian RMS(second derivative per spectrum)alert = curvature_rms / signal_scale, saturated at 1%
Forme spectraleD1 RMSVariabilité localeSpectre structuréPlatBiologie ou artefactmedian RMS(first derivative per spectrum)alert = d1_rms / signal_scale, saturated at 5%
Outliers multivariésPCA Q (SPE)Non expliqué par PCASpectre atypiqueConformeArtefact, mélangep95(Q/SPE residual) / median(Q/SPE residual)alert = min(1, pca_q_ratio / 8)
Outliers multivariésHotelling T²Extrême dans PCAExtrême mais cohérentCentralVariabilité naturellep95(Hotelling T2) / median(Hotelling T2)alert = min(1, hotelling_t2_ratio / 8)
Outliers multivariésMahalanobis HDistance au nuageOutlier globalPopulation normaleDomaine différentp95(sqrt(T2)) / median(sqrt(T2))alert = min(1, mahalanobis_h_ratio / 4)
Comparaison à référenceRMS to mean spectrumDistance moyenneSpectre différentTypiqueDomain shiftp95 RMS distance to dataset mean spectrumalert = RMS_p95 / signal_scale, saturated at 25%
Comparaison à référenceSpectral Angle Mapper (SAM)Différence de formeForme différenteSimilaireFond, géométriep95 spectral angle to dataset mean spectrumalert = min(1, SAM_p95 / 0.35 rad)
RépétabilitéRMS intra-IDReproductibilitéMauvaise répétabilitéStablePositionnementmedian RMS distance to repeated-sample centroidalert = RMS_intra_ID / signal_scale, saturated at 10%
RépétabilitéSAM intra-IDVariation de formeInstableStableAcquisitionmedian SAM to repeated-sample centroidalert = min(1, SAM_intra_ID / 0.15 rad)
RépétabilitéCV intra-IDVariabilité interneMauvais contrôleStableOpérateurmedian within-ID band CValert = min(1, CV_intra_ID / 0.25)
Structure du datasetPCA score densityClustersSous-populationsHomogèneLots différents1 / median kNN distance in PCA score spacealert follows density_cv/profile structure complexity, not raw density alone
Structure du datasetLocal Outlier Factor (LOF)Anomalie localeSpectre isoléPopulation normaleCas raresp95 approximate LOF from PCA-score kNN distancesalert = min(1, max(0, LOF_p95 - 1) / 2)
Structure du datasetIsolation Forest scoreAnomalie globaleSpectre atypiqueNormalDiverses causesp95 IsolationForest anomaly score on PCA scoresalert follows structure complexity; raw score is implementation-dependent
Technology-specific extensions
TechnologieAdaptations / métriquesAnomalies cibléesCommentaire pratique
UV-Vis 300-1000 nmBaseline, pente globale, dérive aux bords 300-350 et 900-1000; métriques par zonesLumière parasite, mauvais blanc, saturation, faible signal aux extrémitésLes bords sont souvent instables; calculer aussi des scores edge/middle.
UV-Vis 300-1000 nmSaturation / clipping proche absorbance max ou réflectance maxSignal écrêtéTrès important si absorption forte.
UV-Vis 300-1000 nmRed-edge, position de maximum, ratios de bandes si végétalDécalage biologique ou artefact optiqueAide à distinguer changement réel et problème d'acquisition.
UV-Vis 300-1000 nmSmoothness / roughness indexBruit haute fréquenceSouvent plus informatif que le SNR seul.
MIR / ATR-FTIRATR contact quality index: intensité globale, aire totale, profondeur des bandes clésMauvais contact cristal-échantillonCrucial: beaucoup d'anomalies viennent du contact ATR.
MIR / ATR-FTIRCO2 / H2O atmospheric bandsMauvaise correction atmosphériquePics parasites fréquents.
MIR / ATR-FTIRBaseline curvature / rubber-band residualDiffusion, contact, dérive baselineTrès utile avant PCA.
MIR / ATR-FTIRPeak position shiftMauvais alignement spectral / calibrationImportant en FTIR car de petits shifts comptent.
MIR / ATR-FTIRBand area ratios sur bandes connuesSpectre chimiquement incohérentÀ adapter par matrice: polysaccharides, protéines, lipides, etc.
HS-MSTotal Ion Current (TIC), Base Peak Intensity (BPI)Injection faible, ionisation instableÉquivalent MS du niveau global spectral.
HS-MSNombre de pics détectésSpectre pauvre ou trop bruitéTrop peu = mauvais signal; trop = bruit/contamination.
HS-MSMass accuracy / m/z driftProblème calibration masseFondamental en HRMS.
HS-MSRetention time drift si LC/GC-MSDérive chromatographiqueÀ suivre sur standards/QC pools.
HS-MSBlank contamination scoreContaminants / carry-overComparer échantillons vs blancs.
HS-MSInternal standard CVVariabilité instrumentaleTrès robuste si standards disponibles.
HS-MSMissingness par featureInstabilité de détectionCrucial pour filtrer les variables.
Avec répétitionsRMS intra-échantillonRépétabilité globaleApplicable à toutes les technologies.
Avec répétitionsSAM / corrélation intra-échantillonRépétabilité de formeTrès utile pour spectres.
Avec répétitionsCV intra-échantillon par bande / featureRépétabilité localeDétecte les zones instables.
Avec répétitionsICC ou variance componentsPart variance échantillon vs techniqueTrès utile si plusieurs répétitions par sample.
Avec répétitionsDistance au centroïde intra-IDRépétition aberrantePermet de flagger la mauvaise répétition plutôt que le sample entier.
Bug-hunting / supervised audits
Famille de bug potentielMéthodes à ajouterCe que ça détecteÉtat dans l’explorateur
Shift spectral globalCorrélation spectre moyen inter-dataset, DTW, cross-correlation, comparaison positions de picsDécalage en longueur d'onde, mauvais alignement, interpolation différentePartiellement calculé: cross-correlation lag et dispersion des positions de pics vs spectre moyen.
Baseline / offset / gainRégression chaque spectre vs spectre moyen: x = a + b ref + residual; suivi de a, b, RMS résiduelOffset additif, effet multiplicatif, dérive de baselineCalculé dans reference.affine_*.
Mélange de lignes / mauvais appariement X-M-YVérification index, hash des lignes, duplication ID, distance spectrale intra-ID, labels incohérentsLignes mélangées, metadata mal alignées, Y attribué au mauvais spectrePartiellement couvert par répétabilité intra-ID; checks index/hash à ajouter au pipeline canonical.
Fuite d'information / répétitions mal splitéesGroupKFold par sample_id vs StratifiedKFold random; audit des partitions par sample_idPerformance artificiellement bonne due aux répétitionsNécessite splits et benchmark modèle; non calculé par la carte descriptive.
Label bugsÉchantillons proches en X mais Y différents, confident learning, erreurs systématiques FP/FNY inversés, erreurs de saisie, classes ambiguësNécessite Y et/ou modèle; recommandé pour l'explorateur supervisé.
Sous-domaines cachésPCA/UMAP/t-SNE + clustering non supervisé + association avec dataset/Y/date/operatorLots, campagnes, sondes, backgrounds non renseignésPartiellement calculé par structure PCA/LOF; UMAP/t-SNE hors carte statique.
Artefacts localisés inconnusCarte wavelength x dataset: différence moyenne, différence variance, KS par longueur d'ondeRégions spectrales anormales non anticipéesÀ calculer au niveau banque quand plusieurs datasets partagent un axe spectral.
Ruptures instrumentalesDiscontinuités dans dérivées, changepoint detectionSplice, raccord détecteur, saut local non prévuCalculé par jump/spike rates; changepoint plus avancé à ajouter.
Mélange / contamination spectraleNMF / unmixing / reconstruction par convex hullComposante externe: fond, plastique, solNon calculé automatiquement; nécessite hypothèses de composants ou grande bibliothèque.
Features instables mais prédictivesImportance modèle vs instabilité QC par variableModèle qui apprend un artefact plutôt qu'un signal biologiqueNécessite modèle supervisé; recommandé pour rapports de benchmark.

Variables

Targets 4

mineral_name

target · categorical
mineral_name classesArmangiteArmangite: 22IriginiteIriginite: 11AminoffiteAminoffite: 11BarysiliteBarysilite: 11VladimiriteVladimirite: 11AlmandineAlmandine: 11AndraditeAndradite: 11ChalcostibiteChalcostibite: 11BottinoiteBottinoite: 11AnataseAnatase: 11
n / missing11 / 0
Classes10
Balance (entropy)0.99
Imbalance ratio2
Top classArmangite (2)

chemical_formula_sum

target · categorical
chemical_formula_sum classesC As18 Mn26 O57C As18 Mn26 O57: 22H6 Mo2 O12 UH6 Mo2 O12 U: 11Be2 Ca3 H2 O12 Si3Be2 Ca3 H2 O12 Si3: 11Ca0.182 Mn O21 Pb7.818 Si6Ca0.182 Mn O21 Pb7.818 Si6: 11As3 Ca4 H9 O16As3 Ca4 H9 O16: 11Al2 Fe3 O12 Si3Al2 Fe3 O12 Si3: 11Ca3 Fe2 O12 Si3Ca3 Fe2 O12 Si3: 11Cu S2 SbCu S2 Sb: 11Ni O18 Sb2Ni O18 Sb2: 11O2 TiO2 Ti: 11
n / missing11 / 0
Classes10
Balance (entropy)0.99
Imbalance ratio2
Top classC As18 Mn26 O57 (2)

compound_source

target · categorical
n / missing11 / 0
Classes11
Balance (entropy)1
Imbalance ratio1
Top classR060269 (1)

rod_database_code

target · categorical
n / missing11 / 0
Classes11
Balance (entropy)1
Imbalance ratio1
Top class1000049 (1)

Metadata 5

chemical_name_mineral

metadata · categorical
chemical_name_mineral classesArmangiteArmangite: 22IriginiteIriginite: 11AminoffiteAminoffite: 11BarysiliteBarysilite: 11VladimiriteVladimirite: 11AlmandineAlmandine: 11AndraditeAndradite: 11ChalcostibiteChalcostibite: 11BottinoiteBottinoite: 11AnataseAnatase: 11
n / missing11 / 0
Classes10
Balance (entropy)0.99
Imbalance ratio2
Top classArmangite (2)

chemical_compound_source

metadata · categorical
n / missing11 / 0
Classes11
Balance (entropy)1
Imbalance ratio1
Top classR060269 (1)

publ_section_title

metadata · categorical
publ_section_title classesArmangite, Mn26[As6(OH)4O14][…Armangite, Mn26[As6(OH)4O14][As6O18]2[CO3], a fluorite derivative structure: 22The crystal chemistry of uran…The crystal chemistry of uranyl molybdates. II. the crystal structure of iriginite: 11Refinement of the crystal str…Refinement of the crystal structure of aminoffite: 11Barysilite from Garpenberg No…Barysilite from Garpenberg Norra, Dalarna, Sweden: occurrence and crystal structure refinement Locality: Garpenberg Nora mine, Dalarna, Sweden: 11The crystal structure of vlad…The crystal structure of vladimirite, with a revised chemical formula, Ca4(AsO4)2(AsO3OH)*4H2O Note: Sample R080001: 11A combined temperature depend…A combined temperature dependent 57Fe Mossbauer and single crystal X-ray diffraction study of synthetic almandine: evidence for the Gol'danskii-Karyagin Effect Sample: T = 293 K (B): 11The crystal chemistry of the …The crystal chemistry of the silicate garnets sample An: 11Crystal structures of chalcos…Crystal structures of chalcostibite (CuSbS2) and emplectite (CuBiS2): Structural relationship of stereochemical activity between chalcostibite and emplectite: 11Bottinoite, Ni(H2O)6[Sb(OH)6]…Bottinoite, Ni(H2O)6[Sb(OH)6]2: Crystal structure, twinning and hydrogen-bond model Sample: BS2, synthetic Note: U(1,2) for Sb1 and Sb3 changed to match symmetry constraints.: 11Structural and thermal parame…Structural and thermal parameters for rutile and anatase: 11
n / missing11 / 0
Classes10
Balance (entropy)0.99
Imbalance ratio2
Top classArmangite, Mn26[As6(OH)4O14][As6O18]2[CO3], a fluorite derivative structure (2)

journal_paper_doi

metadata · categorical
n / missing11 / 5
Classes6
Balance (entropy)1
Imbalance ratio1
Top class10.2113/gscanmin.38.4.847 (1)

journal_year

metadata · numeric
journal_year distribution0121,971 – 1973: 11973 – 1974: 01974 – 1,976: 01,976 – 1978: 01978 – 1979: 21979 – 1,981: 01,981 – 1983: 01983 – 1984: 01984 – 1,986: 01,986 – 1988: 01988 – 1989: 01989 – 1,991: 01,991 – 1993: 21993 – 1994: 01994 – 1,996: 01,996 – 1998: 11998 – 1999: 01999 – 2,001: 12,001 – 2003: 22003 – 2004: 02004 – 2,006: 12,006 – 2008: 02008 – 2009: 02009 – 2,011: 11,9701,9801,9902,0002,0102,020
n / missing11 / 0
Mean ± SD1993 ± 12.5
Median1,996
Range1,971 – 2,011
CV0.00628
Skew / kurtosis-0.55 / -0.68
Normal?yes
Constant metadata 8
  • axis_digestf5432ef05bf368f1
  • axis_unitcm^-1
  • axis_min91.53
  • axis_max1286
  • n_points_original2,478
  • spectroscopy_typeRaman
  • axis_statusreal_common_axis_subset
  • interpolation_appliedfalse

8 variable(s) omitted (no recorded values).

Alignment

Alignment levelobservation
Sample id availableyes
Samples11
Observations (total)11
Reps per samplemin 1 · mean 1 · max 1

Provenance & citation

ContributorRaman Open Database
Origin · url [open]https://solsa.crystallography.net/rod/
Origin · script [manual]source_to_standard.py — standardization script (maintainer-only)

Governance & integrity

Tierpublic
LicenseCC0-1.0
Permitted useResearch and benchmarking.
Access policyOpen per source license.
RedistributionROD states that all data and the database are CC0/public domain. Users should acknowledge the original authors of the structural data.
Content version1.0.0
Schema / protocol2.0
Content hash696cfafac76c0154…
Processing hashae4750fc65a13089…
Metadata hash1808c82ff4e55f3b…

Load this dataset

# pip install nirs4all-datasets
from nirs4all_datasets import get

ds = get("rod_raman_native_axis_2478points_f5432ef0")            # DOI-pinned, checksum-verified, cached
X, y = ds.x(), ds.y()
print(X.shape, y.shape)
card.jsoncroissant.jsonIdentity metadata only — the dataset bytes live at the origin / DOI.