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ROD Raman native-axis 2542-point mineral subset f4e30a51

rod · Raman

ROD Raman native-axis 2542-point mineral subset f4e30a51. v2.0 standardized NIRS package: 1 spectral source(s), 4 declared target(s). Auto-generated from dataset_card.json (verify before publication).

nirv2rod
27
samples
2,542
wavelengths
1
sources
4
targets
21
metadata
Raman
family

Dataset property explorer

Mean profile risk0.63
Highest axisArtefacts locaux · 1.00
Diagnostics8
Sources profiled1
ROD Raman native-axis 2542-point mineral subset f4e30a51 property profile0.250.50.751integritynoiseartefactsbaselinePCA outliersreferencerepeatabilitystructureROD Raman native-axis 2542-point mineral subset f4e30a51 profileintegrity: 0.00noise: 0.01artefacts: 1.00baseline: 1.00PCA outliers: 1.00reference: 1.00repeatability: 0.00structure: 1.00ROD Raman nativ…0 center · 1 outer ring · outward = stronger anomaly / heterogeneity signal

Profile axes

Intégrité0.00
Artefacts locaux1.00
Bruit0.01
Outliers PCA1.00
Distance à la référence1.00
Répétabilité0.00
Baseline / forme1.00
Structure multi-régimes1.00
Diagnostic hypotheses00.250.50.751hypothesis scoreSplice / raccord détecteursSplice / raccord détecteurs: 0.900.90Erreur calibration / référenc…Erreur calibration / référence blanche: 0.840.84Fond différentFond différent: 0.800.80Signature VERA25-likeSignature VERA25-like: 0.750.75Spectre hors domaine valideSpectre hors domaine valide: 0.740.74Erreur interpolation / réécha…Erreur interpolation / rééchantillonnage: 0.730.73Différence de sonde / géométr…Différence de sonde / géométrie: 0.690.69Dataset multi-régimesDataset multi-régimes: 0.690.69
DiagnosticScoreForceSignauxInterprétation probable
Splice / raccord détecteursX0.90forteSpike rate 1.00, Jump rate 1.00, RMS/SAM référence 1.00Rupture aux jonctions de détecteurs, calibration locale ou sonde différente.
Erreur calibration / référence blancheX0.84forteMahalanobis / T2 1.00, Baseline/mean/area 1.00, RMS/SAM référence 1.00Décalage systématique entre campagnes, instruments ou référence blanche.
Fond différentX0.80forteMahalanobis / T2 1.00, Baseline/mean/area 1.00, RMS/SAM référence 1.00Effet systématique du support, blanc/noir, transflectance ou environnement de mesure.
Signature VERA25-likeX0.75forteMahalanobis / T2 1.00, Spike rate 1.00, Jump rate 1.00Combinaison possible changement de sonde + splice, amplifiée par géométrie, fond ou calibration.
Spectre hors domaine valideX0.74forteMahalanobis / T2 1.00, RMS/SAM référence 1.00, Structure PCA 1.00Variété, espèce, lot ou condition différente mais physiquement plausible.
Erreur interpolation / rééchantillonnageX0.73forteSpike rate 1.00, Jump rate 1.00, SNR normal/élevé 1.00Artefacts numériques ou traitement spectral incorrect.
Différence de sonde / géométrieX0.69moyenneMahalanobis / T2 1.00, Baseline/mean/area 1.00, RMS/SAM référence 1.00Modification de l'illumination, collecte, angle ou distance sonde-échantillon.
Dataset multi-régimesX0.69moyenneStructure PCA 1.00, RMS/SAM référence 1.00, Mahalanobis / T2 1.00Mélange de campagnes, opérateurs, lots, setups ou sous-populations spectrales.

Spectral sources

ROD native Raman axis group

X · Raman · ROD source metadata, not consistently specified
ROD native Raman axis group spectra-5,00005,00010,00015,00001,0002,0003,000q05-q95 envelopeq25-q75 envelopemedian spectrummedianq25–q75q05–q95wavelength / cm-150.173cm-1 — median 208.2 (q25–q75 70.91–436.2)67.529cm-1 — median 165.7 (q25–q75 58.06–1190)85.85cm-1 — median 270.8 (q25–q75 64.08–817.5)103.21cm-1 — median 188.2 (q25–q75 74.29–829.4)120.56cm-1 — median 215.9 (q25–q75 55.81–799.9)137.92cm-1 — median 244 (q25–q75 58.54–665.5)156.24cm-1 — median 284.2 (q25–q75 25.92–894.2)173.59cm-1 — median 238.1 (q25–q75 42.04–752.2)190.95cm-1 — median 292.9 (q25–q75 43.73–644.3)209.27cm-1 — median 222.6 (q25–q75 33.51–615.5)226.63cm-1 — median 178 (q25–q75 38.1–508)243.98cm-1 — median 94.9 (q25–q75 33.36–945.7)261.34cm-1 — median 102.3 (q25–q75 24.51–612.1)279.66cm-1 — median 132.5 (q25–q75 20.33–653.9)297.02cm-1 — median 137.5 (q25–q75 32.98–574.1)314.37cm-1 — median 104.8 (q25–q75 44.55–524.3)331.73cm-1 — median 115.9 (q25–q75 21.69–668.7)350.05cm-1 — median 116.8 (q25–q75 22.66–682.9)367.41cm-1 — median 80.86 (q25–q75 8.285–668)384.76cm-1 — median 60.13 (q25–q75 13.14–795.9)403.08cm-1 — median 90.8 (q25–q75 18.95–527.6)420.44cm-1 — median 154.1 (q25–q75 27.11–548.3)437.79cm-1 — median 102.8 (q25–q75 25.34–314.1)455.15cm-1 — median 110.2 (q25–q75 18.34–525)473.47cm-1 — median 118.5 (q25–q75 31.04–460.8)490.83cm-1 — median 89.19 (q25–q75 31.93–353.7)508.18cm-1 — median 75.35 (q25–q75 35.04–626.4)526.5cm-1 — median 88.77 (q25–q75 16.38–445.4)543.86cm-1 — median 68.89 (q25–q75 9.402–482)561.22cm-1 — median 66.69 (q25–q75 15.21–459.8)578.57cm-1 — median 72.67 (q25–q75 15.11–375.1)596.89cm-1 — median 83.26 (q25–q75 20.79–403.2)614.25cm-1 — median 185.7 (q25–q75 41.44–596.2)631.61cm-1 — median 163.2 (q25–q75 14.48–929.3)649.93cm-1 — median 91.09 (q25–q75 18.74–977.7)667.28cm-1 — median 76.82 (q25–q75 24.64–676.7)684.64cm-1 — median 48.12 (q25–q75 17.92–578)701.99cm-1 — median 37.75 (q25–q75 12.96–389)720.32cm-1 — median 40.81 (q25–q75 10.18–374.3)737.67cm-1 — median 41.74 (q25–q75 8.972–477.8)755.03cm-1 — median 35.61 (q25–q75 10.55–470.2)773.35cm-1 — median 33.2 (q25–q75 9.868–570.7)790.7cm-1 — median 54.49 (q25–q75 11.44–600)808.06cm-1 — median 67.76 (q25–q75 10.89–643.1)825.42cm-1 — median 55.41 (q25–q75 15.48–504.2)843.74cm-1 — median 35.58 (q25–q75 11.52–607.5)861.09cm-1 — median 39.03 (q25–q75 15.12–482.3)878.45cm-1 — median 67.07 (q25–q75 20.52–531.3)895.81cm-1 — median 57.06 (q25–q75 15.62–400.5)914.13cm-1 — median 29.54 (q25–q75 12.38–392.3)931.48cm-1 — median 29.94 (q25–q75 7.98–211.2)948.84cm-1 — median 32.33 (q25–q75 7.44–205.7)967.16cm-1 — median 34.87 (q25–q75 6.519–399.5)984.51cm-1 — median 59.98 (q25–q75 7.325–347.1)1001.9cm-1 — median 49.7 (q25–q75 7.482–364.2)1019.2cm-1 — median 36.74 (q25–q75 6.507–100.4)1037.5cm-1 — median 27.04 (q25–q75 6.296–80.01)1054.9cm-1 — median 19.23 (q25–q75 7.079–80.34)1072.3cm-1 — median 23.48 (q25–q75 8.89–85.18)1090.6cm-1 — median 23.93 (q25–q75 9.665–124.4)1107.9cm-1 — median 22.32 (q25–q75 6.523–111.9)1125.3cm-1 — median 24.21 (q25–q75 9.948–66.73)1142.6cm-1 — median 18.8 (q25–q75 7.687–61.39)1161cm-1 — median 24.24 (q25–q75 6.685–45.32)1178.3cm-1 — median 14.43 (q25–q75 4.045–32.72)1195.7cm-1 — median 10.04 (q25–q75 3.702–41.24)1214cm-1 — median 10.25 (q25–q75 4.521–35.68)1231.4cm-1 — median 10.23 (q25–q75 5.278–36.54)1248.7cm-1 — median 9.758 (q25–q75 3.263–25.55)1266.1cm-1 — median 8.204 (q25–q75 2.929–15.63)1284.4cm-1 — median 4.445 (q25–q75 0.5536–14.2)1301.7cm-1 — median 6.014 (q25–q75 1.219–20.83)1319.1cm-1 — median 4.694 (q25–q75 1.483–25.04)1336.5cm-1 — median 4.999 (q25–q75 2.544–18.24)1354.8cm-1 — median 3.068 (q25–q75 -0.5071–17.96)1372.1cm-1 — median 2.133 (q25–q75 -0.9931–18.9)1389.5cm-1 — median -0.5541 (q25–q75 -1.573–19.92)1407.8cm-1 — median 3.179 (q25–q75 -0.7269–18.96)1425.2cm-1 — median 5.222 (q25–q75 0.7996–30.47)1442.5cm-1 — median 4.368 (q25–q75 -0.496–19.68)1459.9cm-1 — median 6.261 (q25–q75 0.5429–23)1478.2cm-1 — median 3.476 (q25–q75 1.603–26.62)1495.6cm-1 — median 3.674 (q25–q75 0.4231–17.98)1512.9cm-1 — median 3.362 (q25–q75 1.724–19.35)1531.2cm-1 — median 4.277 (q25–q75 -0.5616–17.26)1548.6cm-1 — median 3.631 (q25–q75 -1.517–12.41)1565.9cm-1 — median 1.111 (q25–q75 -0.4848–12.92)1583.3cm-1 — median 1.746 (q25–q75 0.1001–15.14)1601.6cm-1 — median 4.437 (q25–q75 0.5802–21.18)1619cm-1 — median 6.735 (q25–q75 0.2646–20.02)1636.3cm-1 — median 6.353 (q25–q75 0.3032–19.4)1654.7cm-1 — median 4.552 (q25–q75 0.7577–15.55)1672cm-1 — median 3.393 (q25–q75 0.2406–10.81)1689.4cm-1 — median 5.04 (q25–q75 1.005–11.22)1706.7cm-1 — median 3.279 (q25–q75 0.3611–9.911)1725cm-1 — median 3.896 (q25–q75 1.79–11.97)1742.4cm-1 — median 4.147 (q25–q75 1.165–10.87)1759.8cm-1 — median 5.217 (q25–q75 1.819–11.17)1777.1cm-1 — median 3.975 (q25–q75 0.6121–9.03)1795.4cm-1 — median 3.645 (q25–q75 -0.1324–8.102)1812.8cm-1 — median 1.962 (q25–q75 -0.2047–10.9)1830.1cm-1 — median 2.034 (q25–q75 -0.07498–8.829)1848.5cm-1 — median 4.432 (q25–q75 -0.1424–8.334)1865.8cm-1 — median 4.125 (q25–q75 -0.3859–9.374)1883.2cm-1 — median 6.208 (q25–q75 0.7894–11.68)1900.5cm-1 — median 5.764 (q25–q75 1.932–13.48)1918.9cm-1 — median 5.515 (q25–q75 0.3891–11.08)1936.2cm-1 — median 4.308 (q25–q75 0.4914–12.46)1953.6cm-1 — median 7.976 (q25–q75 2.158–15.39)1971.9cm-1 — median 6.312 (q25–q75 1.675–16.09)1989.2cm-1 — median 5.88 (q25–q75 3.559–19.77)2006.6cm-1 — median 5.322 (q25–q75 3.089–17.57)2024cm-1 — median 4.81 (q25–q75 2.31–16.5)2042.3cm-1 — median 5.112 (q25–q75 3.18–19.39)2059.6cm-1 — median 7.68 (q25–q75 3.421–21.11)2077cm-1 — median 7.836 (q25–q75 3.026–22.16)2095.3cm-1 — median 8.019 (q25–q75 3.696–18.37)2112.7cm-1 — median 9.708 (q25–q75 2.94–18.98)2130cm-1 — median 8.338 (q25–q75 2.523–18.81)2147.4cm-1 — median 10.81 (q25–q75 4.46–23.19)2165.7cm-1 — median 10.15 (q25–q75 3.372–20.81)2183.1cm-1 — median 6.409 (q25–q75 2.184–19.62)2200.4cm-1 — median 7.874 (q25–q75 3.471–21.16)2218.7cm-1 — median 3.856 (q25–q75 0.8908–17.89)2236.1cm-1 — median 4.401 (q25–q75 1.936–18.77)2253.4cm-1 — median 6.608 (q25–q75 1.523–16.41)2270.8cm-1 — median 6.854 (q25–q75 0.1483–15.19)2289.1cm-1 — median 3.871 (q25–q75 0.3279–14.07)2306.5cm-1 — median 7.937 (q25–q75 -0.3448–11.75)2323.8cm-1 — median 5.435 (q25–q75 0.5984–14.52)2341.2cm-1 — median 1.147 (q25–q75 -1.319–10.81)2359.5cm-1 — median 0.5911 (q25–q75 -2.51–10.67)2376.9cm-1 — median 1.491 (q25–q75 -0.3937–9.379)2394.2cm-1 — median 1.986 (q25–q75 -1.86–9.497)2412.5cm-1 — median 1.479 (q25–q75 -1.917–8.366)2429.9cm-1 — median 2.414 (q25–q75 -1.65–10.2)2447.3cm-1 — median 0.4649 (q25–q75 -3.835–10.37)2464.6cm-1 — median 0.7444 (q25–q75 -4.105–6.722)2482.9cm-1 — median -1.4 (q25–q75 -6.385–6.691)2500.3cm-1 — median -0.9208 (q25–q75 -5.601–14.54)

Sampling

Wavelengths2,542
Axis range50.17–2500 cm-1
Mean spacing0.964 cm-1
Griduniform
Observations27

Signal & quality

Value range-257 – 2.42e+04
Mean range16.9 – 1.69e+03
Mean level336.6
Area8.247e+05
PTP1673
Noise RMS0.43949
SNR7.7e+02
SNR dB6e+01 dB
Dynamic range1.67e+03
Smoothness20.61
Saturated0.0%
X-outliers8

Integrity & artefacts

NaN ratio0.00%
Inf count0
Zero ratio0.00%
Spike count2,747
Spike rate4.01%
Jump count6,145
Jump rate8.96%
Clip fraction0.00%

Shape & reference

Baseline slope-1100.6
Curvature RMS9.62
D1 RMS36.575
RMS to mean509.4
RMS p952461
SAM to mean1.0512
SAM p951.3629
Affine offset p95396.07
Affine gain p95 Δ3.0959
Affine residual p952007.6
Xcorr lag p9550

Outliers & repeatability

PCA Q p95/median6.5
Hotelling T2 p95/median36
Mahalanobis H p95/median6
Repeat groups0

Dimensionality (PCA)

Effective rank4.5
PCs → 95% var7
PCs → 99% var11
Top-10 cum. var98.9%
Computed metric scores 29worst 1.00
FamilleMétrique calculéeValeurScoreNiveauInterprétation datasetCauses typiquesCalcul / scoring
Intégrité des donnéesNaN ratiointegrity.nan_ratio0%0.00faibleSpectre completErreur acquisition/exportcount(isnan(X)) / X.sizealert = min(1, nan_ratio / 0.05)
Intégrité des donnéesInf countintegrity.inf_count00.00faibleNormalCalculs invalidescount(isinf(X))alert = min(1, inf_count / 1)
Intégrité des donnéesZero ratiointegrity.zero_ratio0.00291%0.00faibleNormalExport, saturationcount(X == 0) / count(finite X)alert = min(1, zero_ratio / 0.05)
Amplitude globaleMean reflectanceamplitude.mean_reflectance336.651.00fortValeur atypique: Trop clair / fond visible ou Trop sombreFond, géométriemean(X finite)alert reuses baseline/shape drift because absolute reflectance ranges are technology-dependent
Amplitude globaleArea under curveamplitude.area_under_curve8.2472e+051.00fortValeur atypique: Différence d'éclairement ou NormalDistance sondetrapezoid(mean_spectrum, spectral_axis)alert reuses baseline/shape drift because area scale depends on axis and units
Amplitude globalePeak-to-peak (PTP)amplitude.peak_to_peak1673.50.00faibleVariabilité forteSaturationmax(mean_spectrum) - min(mean_spectrum)alert increases when dynamic range is abnormally flat
Amplitude globaleVarianceamplitude.variance1.5878e+060.00faibleNormal ou hétérogèneMauvais contactvar(X finite)alert increases when variance/dynamic range is abnormally flat
BruitNoise RMSnoise.noise_rms0.439490.01faibleStableLampe, détecteurmedian MAD(second derivative) * 1.4826 / sqrt(6)alert = noise_rms / signal_scale, saturated at 5%
BruitSNRnoise.snr771.120.00faibleBon signalAcquisitionmean(abs(X)) / noise_rmsalert decreases with SNR dB; >=40 dB is treated as low alert
BruitBandwise SNRnoise.bandwise_snr_min24.6730.20faibleZone fiableDétecteurmin(abs(mean_spectrum) / local second-derivative noise)alert decreases with worst-band SNR dB; >=35 dB is treated as low alert
Artefacts locauxSpike countartefacts.spike_count2,7471.00fortArtefactsCosmic rays, splicecount robust outliers in second derivativealert follows spike_rate, saturated at 1%
Artefacts locauxSpike rateartefacts.spike_rate4.01%1.00fortSpectre suspectInterpolationspike_count / (n_samples * (n_features - 2))alert = min(1, spike_rate / 0.01)
Artefacts locauxJump countartefacts.jump_count6,1451.00fortRaccord détecteurSplicecount robust outliers in first derivativealert follows jump_rate, saturated at 1%
Artefacts locauxJump rateartefacts.jump_rate8.96%1.00fortProblème spectralCalibrationjump_count / (n_samples * (n_features - 1))alert = min(1, jump_rate / 0.01)
Artefacts locauxClip fractionartefacts.clip_fraction0.00291%0.00faibleNormalDétecteur saturéfraction of finite cells equal to repeated min/max extremaalert = min(1, clip_fraction / 0.01)
Forme spectraleBaseline slopeshape.baseline_slope-1100.61.00fortDériveÉclairementlinear slope of mean_spectrum over normalized axisalert = abs(slope / signal_scale), saturated at 0.5
Forme spectraleCurvature RMSshape.curvature_rms9.620.57moyenForme inhabituelleFond, splicemedian RMS(second derivative per spectrum)alert = curvature_rms / signal_scale, saturated at 1%
Forme spectraleD1 RMSshape.d1_rms36.5750.44moyenSpectre structuréBiologie ou artefactmedian RMS(first derivative per spectrum)alert = d1_rms / signal_scale, saturated at 5%
Outliers multivariésPCA Q (SPE)outliers.pca_q_ratio6.51350.81fortSpectre atypiqueArtefact, mélangep95(Q/SPE residual) / median(Q/SPE residual)alert = min(1, pca_q_ratio / 8)
Outliers multivariésHotelling T²outliers.hotelling_t2_ratio36.4711.00fortExtrême mais cohérentVariabilité naturellep95(Hotelling T2) / median(Hotelling T2)alert = min(1, hotelling_t2_ratio / 8)
Outliers multivariésMahalanobis Houtliers.mahalanobis_h_ratio6.03891.00fortOutlier globalDomaine différentp95(sqrt(T2)) / median(sqrt(T2))alert = min(1, mahalanobis_h_ratio / 4)
Comparaison à référenceRMS to mean spectrumreference.rms_to_mean_spectrum_p9524611.00fortSpectre différentDomain shiftp95 RMS distance to dataset mean spectrumalert = RMS_p95 / signal_scale, saturated at 25%
Comparaison à référenceSpectral Angle Mapper (SAM)reference.sam_to_mean_spectrum_p951.36291.00fortForme différenteFond, géométriep95 spectral angle to dataset mean spectrumalert = min(1, SAM_p95 / 0.35 rad)
RépétabilitéRMS intra-IDrepeatability.rms_intra_id—0.00faibleStablePositionnementmedian RMS distance to repeated-sample centroidalert = RMS_intra_ID / signal_scale, saturated at 10%
RépétabilitéSAM intra-IDrepeatability.sam_intra_id—0.00faibleStableAcquisitionmedian SAM to repeated-sample centroidalert = min(1, SAM_intra_ID / 0.15 rad)
RépétabilitéCV intra-IDrepeatability.cv_intra_id—0.00faibleStableOpérateurmedian within-ID band CValert = min(1, CV_intra_ID / 0.25)
Structure du datasetPCA score densitystructure.pca_score_density0.00020851.00fortSous-populationsLots différents1 / median kNN distance in PCA score spacealert follows density_cv/profile structure complexity, not raw density alone
Structure du datasetLocal Outlier Factor (LOF)structure.local_outlier_factor_p9527.1291.00fortSpectre isoléCas raresp95 approximate LOF from PCA-score kNN distancesalert = min(1, max(0, LOF_p95 - 1) / 2)
Structure du datasetIsolation Forest scorestructure.isolation_forest_score_p950.609291.00fortSpectre atypiqueDiverses causesp95 IsolationForest anomaly score on PCA scoresalert follows structure complexity; raw score is implementation-dependent
X PCA score plot-100,0000100,000200,000-50,000050,000100,000150,000PC1 -2.356e+04 · PC2 -4674PC1 -1.69e+04 · PC2 -4930PC1 -2.32e+04 · PC2 -4475PC1 -1.877e+04 · PC2 -4305PC1 -2.302e+04 · PC2 -4144PC1 -2.336e+04 · PC2 -4609PC1 -2.172e+04 · PC2 -3942PC1 4.514e+04 · PC2 1.234e+05PC1 -1.911e+04 · PC2 -4732PC1 -4398 · PC2 -2573PC1 -1.996e+04 · PC2 -2880PC1 -5755 · PC2 574.9PC1 7.462e+04 · PC2 2691PC1 -2.298e+04 · PC2 -4909PC1 -2.146e+04 · PC2 -4606PC1 -2.015e+04 · PC2 -4061PC1 760.7 · PC2 -9449PC1 3.69e+04 · PC2 -2940PC1 -8056 · PC2 -1345PC1 2.102e+04 · PC2 -2206PC1 1.945e+05 · PC2 -3.66e+04PC1 -2.188e+04 · PC2 -4966PC1 -1.956e+04 · PC2 -3767PC1 -1.68e+04 · PC2 239.3PC1 -1.943e+04 · PC2 -5149PC1 -123.9 · PC2 -1045PC1 -2.274e+04 · PC2 -4574PC1 (55.6%)PC2 (17.2%)27 scores
PCA explained variance0%25%50%75%100%PC1: 55.6% (cumulative 55.6%)1PC2: 17.2% (cumulative 72.8%)2PC3: 10.6% (cumulative 83.4%)3PC4: 5.1% (cumulative 88.5%)4PC5: 2.6% (cumulative 91.1%)5PC6: 2.5% (cumulative 93.7%)6PC7: 1.8% (cumulative 95.5%)7PC8: 1.7% (cumulative 97.2%)8PC9: 0.9% (cumulative 98.2%)9PC10: 0.7% (cumulative 98.9%)10cumulative explained variancePC variancecumulativeprincipal component · cumulative (dashed)

Metric interpretation reference

Metric catalog 29
FamilleMétriqueCe qu’elle détecteForte valeur =Faible valeur =Causes typiquesCalcul / score
Intégrité des donnéesNaN ratioDonnées manquantesSpectre corrompuSpectre completErreur acquisition/exportcount(isnan(X)) / X.sizealert = min(1, nan_ratio / 0.05)
Intégrité des donnéesInf countValeurs infiniesCorruptionNormalCalculs invalidescount(isinf(X))alert = min(1, inf_count / 1)
Intégrité des donnéesZero ratioColonnes ou cellules nullesSpectre tronquéNormalExport, saturationcount(X == 0) / count(finite X)alert = min(1, zero_ratio / 0.05)
Amplitude globaleMean reflectanceNiveau moyenTrop clair / fond visibleTrop sombreFond, géométriemean(X finite)alert reuses baseline/shape drift because absolute reflectance ranges are technology-dependent
Amplitude globaleArea under curveIntensité globaleDifférence d'éclairementNormalDistance sondetrapezoid(mean_spectrum, spectral_axis)alert reuses baseline/shape drift because area scale depends on axis and units
Amplitude globalePeak-to-peak (PTP)DynamiqueVariabilité forteSpectre platSaturationmax(mean_spectrum) - min(mean_spectrum)alert increases when dynamic range is abnormally flat
Amplitude globaleVarianceVariabilité spectraleNormal ou hétérogèneSpectre platMauvais contactvar(X finite)alert increases when variance/dynamic range is abnormally flat
BruitNoise RMSBruit haute fréquenceBruitéStableLampe, détecteurmedian MAD(second derivative) * 1.4826 / sqrt(6)alert = noise_rms / signal_scale, saturated at 5%
BruitSNRQualité signalBon signalMauvais signalAcquisitionmean(abs(X)) / noise_rmsalert decreases with SNR dB; >=40 dB is treated as low alert
BruitBandwise SNRBruit localiséZone fiableZone problématiqueDétecteurmin(abs(mean_spectrum) / local second-derivative noise)alert decreases with worst-band SNR dB; >=35 dB is treated as low alert
Artefacts locauxSpike countPics étroitsArtefactsSpectre propreCosmic rays, splicecount robust outliers in second derivativealert follows spike_rate, saturated at 1%
Artefacts locauxSpike rateDensité de picsSpectre suspectNormalInterpolationspike_count / (n_samples * (n_features - 2))alert = min(1, spike_rate / 0.01)
Artefacts locauxJump countDiscontinuitésRaccord détecteurContinuSplicecount robust outliers in first derivativealert follows jump_rate, saturated at 1%
Artefacts locauxJump rateFréquence de sautsProblème spectralNormalCalibrationjump_count / (n_samples * (n_features - 1))alert = min(1, jump_rate / 0.01)
Artefacts locauxClip fractionSaturationClippingNormalDétecteur saturéfraction of finite cells equal to repeated min/max extremaalert = min(1, clip_fraction / 0.01)
Forme spectraleBaseline slopePente globaleDériveStableÉclairementlinear slope of mean_spectrum over normalized axisalert = abs(slope / signal_scale), saturated at 0.5
Forme spectraleCurvature RMSCourbureForme inhabituelleLisseFond, splicemedian RMS(second derivative per spectrum)alert = curvature_rms / signal_scale, saturated at 1%
Forme spectraleD1 RMSVariabilité localeSpectre structuréPlatBiologie ou artefactmedian RMS(first derivative per spectrum)alert = d1_rms / signal_scale, saturated at 5%
Outliers multivariésPCA Q (SPE)Non expliqué par PCASpectre atypiqueConformeArtefact, mélangep95(Q/SPE residual) / median(Q/SPE residual)alert = min(1, pca_q_ratio / 8)
Outliers multivariésHotelling T²Extrême dans PCAExtrême mais cohérentCentralVariabilité naturellep95(Hotelling T2) / median(Hotelling T2)alert = min(1, hotelling_t2_ratio / 8)
Outliers multivariésMahalanobis HDistance au nuageOutlier globalPopulation normaleDomaine différentp95(sqrt(T2)) / median(sqrt(T2))alert = min(1, mahalanobis_h_ratio / 4)
Comparaison à référenceRMS to mean spectrumDistance moyenneSpectre différentTypiqueDomain shiftp95 RMS distance to dataset mean spectrumalert = RMS_p95 / signal_scale, saturated at 25%
Comparaison à référenceSpectral Angle Mapper (SAM)Différence de formeForme différenteSimilaireFond, géométriep95 spectral angle to dataset mean spectrumalert = min(1, SAM_p95 / 0.35 rad)
RépétabilitéRMS intra-IDReproductibilitéMauvaise répétabilitéStablePositionnementmedian RMS distance to repeated-sample centroidalert = RMS_intra_ID / signal_scale, saturated at 10%
RépétabilitéSAM intra-IDVariation de formeInstableStableAcquisitionmedian SAM to repeated-sample centroidalert = min(1, SAM_intra_ID / 0.15 rad)
RépétabilitéCV intra-IDVariabilité interneMauvais contrôleStableOpérateurmedian within-ID band CValert = min(1, CV_intra_ID / 0.25)
Structure du datasetPCA score densityClustersSous-populationsHomogèneLots différents1 / median kNN distance in PCA score spacealert follows density_cv/profile structure complexity, not raw density alone
Structure du datasetLocal Outlier Factor (LOF)Anomalie localeSpectre isoléPopulation normaleCas raresp95 approximate LOF from PCA-score kNN distancesalert = min(1, max(0, LOF_p95 - 1) / 2)
Structure du datasetIsolation Forest scoreAnomalie globaleSpectre atypiqueNormalDiverses causesp95 IsolationForest anomaly score on PCA scoresalert follows structure complexity; raw score is implementation-dependent
Technology-specific extensions
TechnologieAdaptations / métriquesAnomalies cibléesCommentaire pratique
UV-Vis 300-1000 nmBaseline, pente globale, dérive aux bords 300-350 et 900-1000; métriques par zonesLumière parasite, mauvais blanc, saturation, faible signal aux extrémitésLes bords sont souvent instables; calculer aussi des scores edge/middle.
UV-Vis 300-1000 nmSaturation / clipping proche absorbance max ou réflectance maxSignal écrêtéTrès important si absorption forte.
UV-Vis 300-1000 nmRed-edge, position de maximum, ratios de bandes si végétalDécalage biologique ou artefact optiqueAide à distinguer changement réel et problème d'acquisition.
UV-Vis 300-1000 nmSmoothness / roughness indexBruit haute fréquenceSouvent plus informatif que le SNR seul.
MIR / ATR-FTIRATR contact quality index: intensité globale, aire totale, profondeur des bandes clésMauvais contact cristal-échantillonCrucial: beaucoup d'anomalies viennent du contact ATR.
MIR / ATR-FTIRCO2 / H2O atmospheric bandsMauvaise correction atmosphériquePics parasites fréquents.
MIR / ATR-FTIRBaseline curvature / rubber-band residualDiffusion, contact, dérive baselineTrès utile avant PCA.
MIR / ATR-FTIRPeak position shiftMauvais alignement spectral / calibrationImportant en FTIR car de petits shifts comptent.
MIR / ATR-FTIRBand area ratios sur bandes connuesSpectre chimiquement incohérentÀ adapter par matrice: polysaccharides, protéines, lipides, etc.
HS-MSTotal Ion Current (TIC), Base Peak Intensity (BPI)Injection faible, ionisation instableÉquivalent MS du niveau global spectral.
HS-MSNombre de pics détectésSpectre pauvre ou trop bruitéTrop peu = mauvais signal; trop = bruit/contamination.
HS-MSMass accuracy / m/z driftProblème calibration masseFondamental en HRMS.
HS-MSRetention time drift si LC/GC-MSDérive chromatographiqueÀ suivre sur standards/QC pools.
HS-MSBlank contamination scoreContaminants / carry-overComparer échantillons vs blancs.
HS-MSInternal standard CVVariabilité instrumentaleTrès robuste si standards disponibles.
HS-MSMissingness par featureInstabilité de détectionCrucial pour filtrer les variables.
Avec répétitionsRMS intra-échantillonRépétabilité globaleApplicable à toutes les technologies.
Avec répétitionsSAM / corrélation intra-échantillonRépétabilité de formeTrès utile pour spectres.
Avec répétitionsCV intra-échantillon par bande / featureRépétabilité localeDétecte les zones instables.
Avec répétitionsICC ou variance componentsPart variance échantillon vs techniqueTrès utile si plusieurs répétitions par sample.
Avec répétitionsDistance au centroïde intra-IDRépétition aberrantePermet de flagger la mauvaise répétition plutôt que le sample entier.
Bug-hunting / supervised audits
Famille de bug potentielMéthodes à ajouterCe que ça détecteÉtat dans l’explorateur
Shift spectral globalCorrélation spectre moyen inter-dataset, DTW, cross-correlation, comparaison positions de picsDécalage en longueur d'onde, mauvais alignement, interpolation différentePartiellement calculé: cross-correlation lag et dispersion des positions de pics vs spectre moyen.
Baseline / offset / gainRégression chaque spectre vs spectre moyen: x = a + b ref + residual; suivi de a, b, RMS résiduelOffset additif, effet multiplicatif, dérive de baselineCalculé dans reference.affine_*.
Mélange de lignes / mauvais appariement X-M-YVérification index, hash des lignes, duplication ID, distance spectrale intra-ID, labels incohérentsLignes mélangées, metadata mal alignées, Y attribué au mauvais spectrePartiellement couvert par répétabilité intra-ID; checks index/hash à ajouter au pipeline canonical.
Fuite d'information / répétitions mal splitéesGroupKFold par sample_id vs StratifiedKFold random; audit des partitions par sample_idPerformance artificiellement bonne due aux répétitionsNécessite splits et benchmark modèle; non calculé par la carte descriptive.
Label bugsÉchantillons proches en X mais Y différents, confident learning, erreurs systématiques FP/FNY inversés, erreurs de saisie, classes ambiguësNécessite Y et/ou modèle; recommandé pour l'explorateur supervisé.
Sous-domaines cachésPCA/UMAP/t-SNE + clustering non supervisé + association avec dataset/Y/date/operatorLots, campagnes, sondes, backgrounds non renseignésPartiellement calculé par structure PCA/LOF; UMAP/t-SNE hors carte statique.
Artefacts localisés inconnusCarte wavelength x dataset: différence moyenne, différence variance, KS par longueur d'ondeRégions spectrales anormales non anticipéesÀ calculer au niveau banque quand plusieurs datasets partagent un axe spectral.
Ruptures instrumentalesDiscontinuités dans dérivées, changepoint detectionSplice, raccord détecteur, saut local non prévuCalculé par jump/spike rates; changepoint plus avancé à ajouter.
Mélange / contamination spectraleNMF / unmixing / reconstruction par convex hullComposante externe: fond, plastique, solNon calculé automatiquement; nécessite hypothèses de composants ou grande bibliothèque.
Features instables mais prédictivesImportance modèle vs instabilité QC par variableModèle qui apprend un artefact plutôt qu'un signal biologiqueNécessite modèle supervisé; recommandé pour rapports de benchmark.

Variables

Targets 4

mineral_name

target · categorical
n / missing27 / 0
Classes27
Balance (entropy)1
Imbalance ratio1
Top classaluminium(III) oxide (1)

chemical_formula_sum

target · categorical
chemical_formula_sum classesO2 TiO2 Ti: 22Al2 O3Al2 O3: 11Ag ClAg Cl: 11B2 O3B2 O3: 11Ba Cr O4Ba Cr O4: 11Ca O2Ca O2: 11Co3 O4Co3 O4: 11Cr2 O3Cr2 O3: 11Er2 O3Er2 O3: 11Ga2 O3Ga2 O3: 11+10 more+10 more: 1010
n / missing27 / 0
Classes26
Balance (entropy)1
Imbalance ratio2
Top classO2 Ti (2)

compound_source

target · categorical
compound_source classescommercial powder Alfa Aesar …commercial powder Alfa Aesar 99.9%: 55commercial powder Alfa Aesar …commercial powder Alfa Aesar 99%: 22commercial powder Alfa Aesar …commercial powder Alfa Aesar 99.99%: 22commercial powder Prolabo purcommercial powder Prolabo pur: 22Commercial powder Chem PUR 99…Commercial powder Chem PUR 99.97%: 11Commercial powder Alfa Aesar …Commercial powder Alfa Aesar 99.9%: 11Commercial powder Alfa Aesar …Commercial powder Alfa Aesar 99.98%: 11Commercial powder Aldrich 98%Commercial powder Aldrich 98%: 11commercial powder Aldrich 78%commercial powder Aldrich 78%: 11commercial powder Alfa Aesar …commercial powder Alfa Aesar 99,7%: 11+10 more+10 more: 1010
n / missing27 / 0
Classes20
Balance (entropy)0.95
Imbalance ratio5
Top classcommercial powder Alfa Aesar 99.9% (5)

rod_database_code

target · categorical
n / missing27 / 0
Classes27
Balance (entropy)1
Imbalance ratio1
Top class3500000 (1)

Metadata 6

chemical_name_mineral

metadata · categorical
n / missing27 / 0
Classes27
Balance (entropy)1
Imbalance ratio1
Top classaluminium(III) oxide (1)

chemical_name_systematic

metadata · categorical
chemical_name_systematic classestitanium(IV) oxidetitanium(IV) oxide: 22aluminium(III) oxidealuminium(III) oxide: 11silver(I) chloridesilver(I) chloride: 11boron trioxideboron trioxide: 11barium tetraoxochromate(VI)barium tetraoxochromate(VI): 11calcium peroxidecalcium peroxide: 11cobalt(II) dicobalt(III) oxidecobalt(II) dicobalt(III) oxide: 11chromium(III) oxidechromium(III) oxide: 11erbium(III) oxideerbium(III) oxide: 11beta gallium(III) oxidebeta gallium(III) oxide: 11+10 more+10 more: 1010
n / missing27 / 0
Classes26
Balance (entropy)1
Imbalance ratio2
Top classtitanium(IV) oxide (2)

chemical_formula_structural

metadata · categorical
chemical_formula_structural classesO2 TiO2 Ti: 22Al2 O3Al2 O3: 11Ag ClAg Cl: 11B2 O3B2 O3: 11Ba Cr O4Ba Cr O4: 11Ca O2Ca O2: 11Co Co2 O4Co Co2 O4: 11Cr2 O3Cr2 O3: 11Er2 O3Er2 O3: 11Ga2 O3Ga2 O3: 11+10 more+10 more: 1010
n / missing27 / 0
Classes26
Balance (entropy)1
Imbalance ratio2
Top classO2 Ti (2)

chemical_compound_source

metadata · categorical
chemical_compound_source classescommercial powder Alfa Aesar …commercial powder Alfa Aesar 99.9%: 55commercial powder Alfa Aesar …commercial powder Alfa Aesar 99%: 22commercial powder Alfa Aesar …commercial powder Alfa Aesar 99.99%: 22commercial powder Prolabo purcommercial powder Prolabo pur: 22Commercial powder Chem PUR 99…Commercial powder Chem PUR 99.97%: 11Commercial powder Alfa Aesar …Commercial powder Alfa Aesar 99.9%: 11Commercial powder Alfa Aesar …Commercial powder Alfa Aesar 99.98%: 11Commercial powder Aldrich 98%Commercial powder Aldrich 98%: 11commercial powder Aldrich 78%commercial powder Aldrich 78%: 11commercial powder Alfa Aesar …commercial powder Alfa Aesar 99,7%: 11+10 more+10 more: 1010
n / missing27 / 0
Classes20
Balance (entropy)0.95
Imbalance ratio5
Top classcommercial powder Alfa Aesar 99.9% (5)

publ_section_title

metadata · categorical
n / missing27 / 0
Classes27
Balance (entropy)1
Imbalance ratio1
Top classRaman spectrum of commercial aluminium(III) oxide (1)

journal_year

metadata · numeric
journal_year distribution01020302,017 – 2017: 242017 – 2017: 02017 – 2017: 02017 – 2017: 02017 – 2017: 02017 – 2018: 02018 – 2018: 02018 – 2018: 02018 – 2018: 02018 – 2018: 02018 – 2018: 02018 – 2,018: 02,018 – 2018: 22018 – 2018: 02018 – 2018: 02018 – 2018: 02018 – 2018: 02018 – 2018: 02018 – 2019: 02019 – 2019: 02019 – 2019: 02019 – 2019: 02019 – 2019: 02019 – 2,019: 12,017.02,017.52,018.02,018.52,019.0
n / missing27 / 0
Mean ± SD2017 ± 0.456
Median2,017
Range2,017 – 2,019
CV0.000226
Skew / kurtosis3.3 / 11
Normal?no
Constant metadata 8
  • axis_digestf4e30a51825ab03c
  • axis_unitcm^-1
  • axis_min50.17
  • axis_max2500
  • n_points_original2,542
  • spectroscopy_typeRaman
  • axis_statusreal_common_axis_subset
  • interpolation_appliedfalse

7 variable(s) omitted (no recorded values).

Alignment

Alignment levelobservation
Sample id availableyes
Samples27
Observations (total)27
Reps per samplemin 1 · mean 1 · max 1

Provenance & citation

ContributorRaman Open Database
Origin · url [open]https://solsa.crystallography.net/rod/
Origin · script [manual]source_to_standard.py — standardization script (maintainer-only)

Governance & integrity

Tierpublic
LicenseCC0-1.0
Permitted useResearch and benchmarking.
Access policyOpen per source license.
RedistributionROD states that all data and the database are CC0/public domain. Users should acknowledge the original authors of the structural data.
Content version1.0.0
Schema / protocol2.0
Content hashf5765c815ccd4fa3…
Processing hashaa700cb2a1ea10be…
Metadata hashec175417d348ec88…

Load this dataset

# pip install nirs4all-datasets
from nirs4all_datasets import get

ds = get("rod_raman_native_axis_2542points_f4e30a51")            # DOI-pinned, checksum-verified, cached
X, y = ds.x(), ds.y()
print(X.shape, y.shape)
card.jsoncroissant.jsonIdentity metadata only — the dataset bytes live at the origin / DOI.